Variant report

Variant	rs10828434
Chromosome Location	chr10:23652065-23652066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23646010..23648566-chr10:23651251..23652960,2	MCF-7	breast:
2	chr10:23650512..23653153-chr10:23656830..23658676,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10159586	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10159622	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10159725	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1039966	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10734044	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10734045	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10741025	0.81[AMR][1000 genomes]
rs10764400	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11013395	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11013408	0.84[EUR][1000 genomes]
rs11013409	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2036917	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2036918	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2036919	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2036920	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2036921	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2137156	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2175503	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4075675	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4326695	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4575157	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747464	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4747465	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4748852	0.80[AMR][1000 genomes]
rs4748864	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4748865	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748867	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4748868	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4748869	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4748870	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4748872	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748873	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482267	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6482268	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6482269	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7076538	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7085049	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7087803	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7092292	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7095180	0.81[AMR][1000 genomes]
rs7893984	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7894108	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7894725	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7898413	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7913858	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7923763	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs869158	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299781	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9299782	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23641800-23653600	Weak transcription	HMEC	breast
2	chr10:23648200-23652600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:23650600-23653400	Weak transcription	NHEK	skin
4	chr10:23650600-23657600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:23650800-23652600	Enhancers	GM12878-XiMat	blood
6	chr10:23651000-23652400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr10:23651200-23652200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:23651200-23652200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr10:23651200-23652200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:23651200-23652400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:23651200-23652400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:23651200-23652400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr10:23651200-23652400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr10:23651200-23652800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:23651200-23653000	Enhancers	Primary B cells from cord blood	blood
16	chr10:23651600-23652200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:23651800-23652400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr10:23652000-23652200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:23652000-23653000	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr10:23652000-23653000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
21	chr10:23652000-23653000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr10:23652000-23653800	Bivalent Enhancer	Primary B cells from peripheral blood	blood

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