Variant report

Variant	rs869158
Chromosome Location	chr10:23650774-23650775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23648901..23651451-chr10:23726092..23728978,2	MCF-7	breast:
2	chr10:23650512..23653153-chr10:23656830..23658676,2	K562	blood:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10159586	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10159622	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10159725	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1039966	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10734044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10734045	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10741025	0.83[AMR][1000 genomes]
rs10764400	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10828434	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013395	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11013408	0.84[EUR][1000 genomes]
rs11013409	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2036917	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2036918	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2036919	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2036920	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2036921	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2137156	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2175503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4075675	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4326695	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4575157	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747464	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4747465	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4748852	0.82[AMR][1000 genomes]
rs4748864	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4748865	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4748868	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4748869	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4748870	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4748872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748873	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482267	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6482268	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6482269	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7076538	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7085049	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7087803	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7092292	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7095180	0.83[AMR][1000 genomes]
rs7100583	0.81[AMR][1000 genomes]
rs7893984	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7894108	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7894725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7898413	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7913858	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7923763	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9299781	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9299782	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23641800-23653600	Weak transcription	HMEC	breast
2	chr10:23648200-23652600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:23649600-23651400	Enhancers	Duodenum Mucosa	Duodenum
4	chr10:23650000-23651600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:23650000-23651600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:23650200-23651600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:23650600-23652000	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:23650600-23653400	Weak transcription	NHEK	skin
9	chr10:23650600-23657600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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