Variant report

Variant	rs2137156
Chromosome Location	chr10:23653791-23653792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10159586	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10159622	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10159725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1039966	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10734044	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10734045	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10741025	0.83[AMR][1000 genomes]
rs10764400	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10828434	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013395	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11013408	0.84[EUR][1000 genomes]
rs11013409	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2036917	0.92[CEU][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2036918	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2036919	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2036920	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2036921	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2175503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075675	0.88[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4326695	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4575157	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747464	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4747465	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4748852	0.82[AMR][1000 genomes]
rs4748864	0.96[CEU][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4748865	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4748867	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4748868	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4748869	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4748870	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4748872	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4748873	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6482267	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6482268	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6482269	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7076538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7085049	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7087803	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7092292	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7095180	0.83[AMR][1000 genomes]
rs7100583	0.81[AMR][1000 genomes]
rs7893984	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7894108	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7894725	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7898413	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7906070	0.81[CEU][hapmap]
rs7913858	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7923763	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs869158	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9299781	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9299782	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23650600-23657600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:23652000-23653800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
3	chr10:23652800-23653800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:23652800-23653800	Enhancers	Esophagus	oesophagus
5	chr10:23652800-23653800	Enhancers	Fetal Thymus	thymus
6	chr10:23653000-23653800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:23653000-23654000	Enhancers	Primary T cells from cord blood	blood
8	chr10:23653000-23654000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr10:23653000-23654200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr10:23653000-23654200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:23653000-23655400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:23653000-23655800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr10:23653000-23656000	Weak transcription	Primary B cells from cord blood	blood
14	chr10:23653200-23654000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:23653200-23654000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:23653200-23654400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:23653200-23657200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr10:23653400-23653800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:23653400-23654800	Enhancers	GM12878-XiMat	blood
20	chr10:23653400-23655000	Enhancers	NHEK	skin
21	chr10:23653600-23655000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:23653600-23655200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:23653600-23655400	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links