Variant report

Variant	rs2036917
Chromosome Location	chr10:23633566-23633567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:23)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:23 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:23633122-23634042	H1-neurons	neurons:	n/a	n/a
2	CTBP2	chr10:23633165-23633740	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr10:23633179-23633744	U87	brain:	n/a	n/a
4	CTCF	chr10:23633460-23633610	HCPEpiC	choroid plexus:	n/a	n/a
5	MAX	chr10:23633104-23633892	SK-N-SH	brain:	n/a	n/a
6	MAX	chr10:23632708-23633724	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
7	MXI1	chr10:23633216-23633857	IMR90	lung:	n/a	n/a
8	POLR2A	chr10:23633157-23633909	SK-N-SH	brain:	n/a	n/a
9	ZNF263	chr10:23632432-23633834	HEK293-T-REx	kidney:	n/a	n/a
10	MAX	chr10:23633171-23633650	A549	lung:	n/a	n/a
11	POLR2A	chr10:23633173-23633750	U87	brain:	n/a	n/a
12	MAX	chr10:23633139-23633767	H1-hESC	embryonic stem cell:	n/a	n/a
13	JUND	chr10:23633566-23633661	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr10:23633144-23633831	H1-neurons	neurons:	n/a	n/a
15	POLR2A	chr10:23633526-23633673	MCF-7	breast:	n/a	n/a
16	POLR2A	chr10:23633174-23633642	U87	brain:	n/a	n/a
17	MAX	chr10:23632824-23633653	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
18	MXI1	chr10:23633403-23633603	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr10:23632771-23633765	H1-neurons	neurons:	n/a	n/a
20	SIN3A	chr10:23632621-23633849	H1-hESC	embryonic stem cell:	n/a	n/a
21	MAX	chr10:23633114-23633870	SK-N-SH	brain:	n/a	n/a
22	POLR2A	chr10:23633262-23633807	SK-N-SH	brain:	n/a	n/a
23	EGR1	chr10:23633134-23633598	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:23633518-23633568	NH-A	brain:	n/a
2	chr10:23633518-23633568	GM12878	blood:	n/a
3	chr10:23633518-23633568	HEEpiC	esophagus:	n/a
4	chr10:23633518-23633568	NHBE	bronchial:	n/a
5	chr10:23633518-23633568	ProgFib	skin:	n/a
6	chr10:23633518-23633568	AG04450	lung:	fetal
7	chr10:23633518-23633568	HCPEpiC	choroid plexus:	n/a
8	chr10:23633518-23633568	BJ	skin:	n/a
9	chr10:23633518-23633568	SK-N-SH_RA	brain:	n/a
10	chr10:23633518-23633568	HEK293	kidney:	embryo
11	chr10:23633518-23633568	Caco-2	colon:	n/a
12	chr10:23633518-23633568	PFSK-1	brain:	n/a
13	chr10:23633518-23633568	SK-N-MC	brain:	n/a
14	chr10:23633518-23633568	PrEC	prostate:	n/a
15	chr10:23633518-23633568	Hepatocyte	liver:	n/a
16	chr10:23633518-23633568	HAEpiC	amniotic membrane:	n/a
17	chr10:23633518-23633568	PANC-1	pancreas:	n/a
18	chr10:23633518-23633568	IMR90	lung:	fetal
19	chr10:23633518-23633568	ECC-1	luminal epithelium:	n/a
20	chr10:23633518-23633568	HCF	heart:	n/a
21	chr10:23633518-23633568	BE2_C	brain:	n/a
22	chr10:23633518-23633568	HIPEpiC	eye:	n/a
23	chr10:23633518-23633568	RPTEC	kidney:	n/a
24	chr10:23633518-23633568	HRE	kidney:	n/a
25	chr10:23633518-23633568	SKMC	muscle:	n/a
26	chr10:23633518-23633568	MCF10A-Er-Src	breast:	n/a
27	chr10:23633518-23633568	HCM	heart:	n/a
28	chr10:23633518-23633568	H1-hESC	embryonic stem cell:	embryo
29	chr10:23633518-23633568	GM19239	blood:	n/a
30	chr10:23633518-23633568	A549	lung:	n/a
31	chr10:23633518-23633568	HRPEpiC	eye:	n/a
32	chr10:23633518-23633568	GM12892	blood:	n/a
33	chr10:23633518-23633568	AG10803	skin:	n/a
34	chr10:23633518-23633568	AoSMC	blood vessel:	n/a
35	chr10:23633518-23633568	HepG2	liver:	n/a
36	chr10:23633518-23633568	ovcar-3	ovarian:	n/a
37	chr10:23633518-23633568	SK-N-SH	brain:	n/a
38	chr10:23633518-23633568	HPAEpiC	pulmonary alveolar:	n/a
39	chr10:23633518-23633568	AG09319	gingival:	n/a
40	chr10:23633518-23633568	NHDF-neo	bronchial:	n/a
41	chr10:23633518-23633568	U87	brain:	n/a
42	chr10:23633518-23633568	AG04449	skin:	fetal
43	chr10:23633518-23633568	MCF-7	breast:	n/a
44	chr10:23633518-23633568	Hela-S3	cervix:	n/a
45	chr10:23633518-23633568	HCT-116	colon:	n/a
46	chr10:23633518-23633568	K562	blood:	n/a
47	chr10:23633518-23633568	HUVEC	blood vessel:	n/a
48	chr10:23633518-23633568	HL-60	blood:	n/a
49	chr10:23633518-23633568	NT2-D1	testis:	n/a
50	chr10:23633518-23633568	GM12891	blood:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23631888..23635089-chr10:23727661..23730060,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OTUD1-1	chr10:23633353-23634110	ENSG00000224215.1

No data

Variant related genes	Relation type
C10orf67	TF binding region
C10orf67	CpG island
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10159586	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10159622	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10159725	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1039966	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10734044	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10734045	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10741025	0.83[AMR][1000 genomes]
rs10764400	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10828426	0.90[YRI][hapmap]
rs10828434	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11013395	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013408	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1408986	0.92[JPT][hapmap]
rs2036918	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2036919	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2036920	0.94[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2036921	0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2137156	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2175503	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4075675	1.00[CHB][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4326695	0.91[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4575157	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4747464	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4747465	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4748848	0.95[YRI][hapmap]
rs4748851	0.95[YRI][hapmap]
rs4748852	0.82[AMR][1000 genomes]
rs4748864	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4748865	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4748867	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4748868	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4748869	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4748870	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4748872	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4748873	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6482267	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6482268	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6482269	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7075197	0.81[LWK][hapmap]
rs7076538	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7085049	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7087803	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7092292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7095180	0.83[AMR][1000 genomes]
rs7100583	0.81[AMR][1000 genomes]
rs7893984	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7894108	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7894725	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7898413	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7904665	0.92[JPT][hapmap];0.90[YRI][hapmap]
rs7904764	0.92[JPT][hapmap];0.90[YRI][hapmap]
rs7913858	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7923763	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs869158	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9299781	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9299782	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs986151	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357321	chr10:23631971-23634519	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3321964	chr10:23632396-23633894	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23632000-23634000	Active TSS	Brain Hippocampus Middle	brain
2	chr10:23632200-23633600	Active TSS	Brain Angular Gyrus	brain
3	chr10:23632200-23633800	Weak transcription	Hela-S3	cervix
4	chr10:23632200-23634000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr10:23632200-23634000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:23632400-23633600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:23632400-23633800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:23632400-23633800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:23632400-23633800	Active TSS	Fetal Brain Female	brain
10	chr10:23632400-23634000	Active TSS	Brain Cingulate Gyrus	brain
11	chr10:23632400-23634000	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr10:23632600-23633600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:23632600-23633600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr10:23632600-23633600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:23632600-23633600	Active TSS	Colon Smooth Muscle	Colon
16	chr10:23632600-23633600	Active TSS	Ovary	ovary
17	chr10:23632600-23633600	Active TSS	Rectal Smooth Muscle	rectum
18	chr10:23632600-23633600	Active TSS	Osteobl	bone
19	chr10:23632600-23633800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
20	chr10:23632600-23633800	Active TSS	H9 Cell Line	embryonic stem cell
21	chr10:23632600-23633800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:23632600-23633800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:23632600-23633800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:23632600-23633800	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr10:23632600-23633800	Active TSS	Right Atrium	heart
26	chr10:23632600-23633800	Active TSS	Right Ventricle	heart
27	chr10:23632600-23633800	Bivalent/Poised TSS	Thymus	Thymus
28	chr10:23632600-23634000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr10:23632600-23634000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr10:23632600-23634000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr10:23632600-23634000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
32	chr10:23632600-23634000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:23632600-23634000	Active TSS	Brain Anterior Caudate	brain
34	chr10:23632600-23634000	Active TSS	Fetal Kidney	kidney
35	chr10:23632600-23634600	Active TSS	Brain Substantia Nigra	brain
36	chr10:23632800-23633600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:23632800-23633600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
38	chr10:23632800-23633600	Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr10:23632800-23633600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr10:23632800-23633600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:23632800-23633600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:23632800-23633800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
43	chr10:23632800-23633800	Active TSS	Psoas Muscle	Psoas
44	chr10:23632800-23633800	Bivalent/Poised TSS	Stomach Mucosa	stomach
45	chr10:23632800-23634000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
46	chr10:23632800-23634000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
47	chr10:23632800-23634000	Bivalent/Poised TSS	Fetal Lung	lung
48	chr10:23632800-23634000	Bivalent/Poised TSS	A549	lung
49	chr10:23633000-23633800	Active TSS	Aorta	Aorta
50	chr10:23633200-23633600	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood

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