Variant report

Variant	rs4326695
Chromosome Location	chr10:23605930-23605931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23605004..23607265-chr10:23613036..23614739,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10159586	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10159622	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10159725	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1039966	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10734044	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10734045	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10741025	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10764400	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10828426	0.91[YRI][hapmap];0.83[AFR][1000 genomes]
rs10828434	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11013395	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11013409	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12413853	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1408986	1.00[JPT][hapmap]
rs2036917	0.91[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2036918	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2036919	0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2036920	0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2036921	0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2137156	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2175503	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4075675	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4575157	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4747459	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4747464	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4747465	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4748848	0.86[YRI][hapmap]
rs4748851	0.86[YRI][hapmap]
rs4748852	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4748864	0.82[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4748865	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4748867	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4748868	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4748869	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4748870	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4748872	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4748873	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6482267	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6482268	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6482269	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7076538	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7085049	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7087803	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7092292	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7095180	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7100583	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7893984	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7894108	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7894725	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7898413	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7904665	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7904764	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7913858	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7923763	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs869158	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9299781	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9299782	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs986151	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1805929	chr10:23605716-23607325	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1818079	chr10:23605716-23607325	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23599800-23632200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:23603200-23607200	Enhancers	Hela-S3	cervix
3	chr10:23605200-23606200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:23605200-23606400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:23605200-23612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:23605400-23606200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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