Variant report

Variant	rs4748852
Chromosome Location	chr10:23585177-23585178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10159586	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10159622	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10159725	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10734044	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10734045	0.81[AMR][1000 genomes]
rs10741025	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764400	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10828434	0.80[AMR][1000 genomes]
rs11013395	0.81[AMR][1000 genomes]
rs11013409	0.82[AMR][1000 genomes]
rs12413853	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2036917	0.82[AMR][1000 genomes]
rs2036918	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2036919	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2036920	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2036921	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2137156	0.82[AMR][1000 genomes]
rs2175503	0.82[AMR][1000 genomes]
rs4075675	0.80[AMR][1000 genomes]
rs4326695	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4747459	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747464	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4747465	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4748864	0.82[AMR][1000 genomes]
rs4748865	0.80[AMR][1000 genomes]
rs4748867	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4748868	0.82[AMR][1000 genomes]
rs4748869	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4748870	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4748872	0.82[AMR][1000 genomes]
rs4748873	0.83[AMR][1000 genomes]
rs6482267	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482268	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482269	0.81[AMR][1000 genomes]
rs7076538	0.82[AMR][1000 genomes]
rs7085049	0.82[AMR][1000 genomes]
rs7087803	0.82[AMR][1000 genomes]
rs7092292	0.82[AMR][1000 genomes]
rs7095180	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7100583	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7893984	0.82[AMR][1000 genomes]
rs7894725	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7898413	0.83[AMR][1000 genomes]
rs7904665	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7904764	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7913858	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7923763	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs869158	0.82[AMR][1000 genomes]
rs9299781	0.81[AMR][1000 genomes]
rs9299782	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23580600-23590800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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