Variant report

Variant	rs2036921
Chromosome Location	chr10:23636418-23636419
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr10:23636404-23636819	HEK293	kidney:	n/a	n/a
2	POLR2A	chr10:23636102-23636848	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
C10orf67	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10159586	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159622	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159725	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1039966	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10734044	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10734045	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10741025	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10764400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828434	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11013395	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11013408	0.86[EUR][1000 genomes]
rs11013409	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2036917	0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2036918	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2137156	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2175503	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4075675	0.85[CHB][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4326695	0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4575157	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4747464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747465	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748852	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4748864	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748865	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4748867	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748868	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4748869	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748870	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748872	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4748873	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6482267	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6482268	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6482269	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7076538	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7085049	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7087803	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7092292	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7095180	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7100583	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7893984	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7894108	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7894725	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7898413	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7906070	0.81[CEU][hapmap]
rs7913858	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7923763	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs869158	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9299781	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9299782	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20282	chr10:23635447-23636434	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23633800-23636600	Weak transcription	Left Ventricle	heart
2	chr10:23633800-23636600	Enhancers	Hela-S3	cervix
3	chr10:23633800-23637400	Enhancers	Fetal Heart	heart
4	chr10:23633800-23638000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:23633800-23640400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:23633800-23640600	Weak transcription	Placenta	Placenta
7	chr10:23633800-23641000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:23634000-23636600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:23634400-23641000	Weak transcription	HSMMtube	muscle
10	chr10:23634600-23636800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:23634600-23640200	Weak transcription	NHLF	lung
12	chr10:23635200-23636600	Weak transcription	HSMM	muscle
13	chr10:23635200-23637200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:23635200-23640600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:23635200-23643800	Weak transcription	Fetal Kidney	kidney
16	chr10:23635400-23637000	Enhancers	HepG2	liver
17	chr10:23635400-23640000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:23635400-23640600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:23635600-23640200	Weak transcription	NHEK	skin
20	chr10:23635600-23640400	Weak transcription	HMEC	breast
21	chr10:23635600-23640400	Weak transcription	Osteobl	bone
22	chr10:23635800-23640000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:23636400-23636600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:23636400-23636600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr10:23636400-23636600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr10:23636400-23636600	Enhancers	Aorta	Aorta
27	chr10:23636400-23636600	Enhancers	Brain Angular Gyrus	brain
28	chr10:23636400-23636600	Enhancers	Brain Anterior Caudate	brain
29	chr10:23636400-23636600	Enhancers	Brain Cingulate Gyrus	brain
30	chr10:23636400-23636600	Flanking Active TSS	Colon Smooth Muscle	Colon
31	chr10:23636400-23636800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr10:23636400-23636800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:23636400-23636800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:23636400-23636800	Enhancers	Psoas Muscle	Psoas
35	chr10:23636400-23636800	Enhancers	NH-A	brain
36	chr10:23636400-23637000	Enhancers	Fetal Muscle Leg	muscle
37	chr10:23636400-23637200	Enhancers	Fetal Stomach	stomach
38	chr10:23636400-23637200	Enhancers	Ovary	ovary

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