Variant report

Variant	rs6492429
Chromosome Location	chr13:90028260-90028261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1576609	0.94[ASN][1000 genomes]
rs16942872	0.94[ASN][1000 genomes]
rs7139850	1.00[EUR][1000 genomes]
rs7320496	0.94[ASN][1000 genomes]
rs7326581	0.94[ASN][1000 genomes]
rs7338116	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7997576	0.94[ASN][1000 genomes]
rs9555880	0.94[ASN][1000 genomes]
rs9555883	0.94[ASN][1000 genomes]
rs9555885	0.94[ASN][1000 genomes]
rs9555886	0.94[ASN][1000 genomes]
rs9560303	0.98[ASN][1000 genomes]
rs9560304	0.94[ASN][1000 genomes]
rs9560308	0.94[ASN][1000 genomes]
rs9560309	0.94[ASN][1000 genomes]
rs9560311	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832676	chr13:89941212-90090424	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900859	chr13:89944833-90036166	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv428613	chr13:90012119-90165711	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90027600-90028800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:90027600-90028800	Enhancers	HUVEC	blood vessel
3	chr13:90027600-90029000	Enhancers	Fetal Lung	lung
4	chr13:90027800-90028400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:90027800-90028600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:90027800-90028600	Enhancers	Fetal Heart	heart
7	chr13:90027800-90028600	Enhancers	Fetal Stomach	stomach
8	chr13:90027800-90028800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:90027800-90028800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:90027800-90028800	Enhancers	Stomach Mucosa	stomach
11	chr13:90028000-90028400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr13:90028000-90028400	Enhancers	Fetal Brain Male	brain
13	chr13:90028000-90028600	Enhancers	Colon Smooth Muscle	Colon
14	chr13:90028200-90028800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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