Variant report

Variant	rs9560303
Chromosome Location	chr13:90033035-90033036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1576609	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16942872	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6492429	0.98[ASN][1000 genomes]
rs7320496	0.96[ASN][1000 genomes]
rs7326581	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7338116	0.96[ASN][1000 genomes]
rs7997576	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9555880	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9555883	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9555885	0.96[ASN][1000 genomes]
rs9555886	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9560304	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9560308	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9560309	0.96[ASN][1000 genomes]
rs9560311	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832676	chr13:89941212-90090424	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900859	chr13:89944833-90036166	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv428613	chr13:90012119-90165711	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90032200-90033200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr13:90032200-90033200	Enhancers	HMEC	breast
3	chr13:90032400-90033200	Enhancers	Stomach Mucosa	stomach
4	chr13:90032600-90033200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:90032600-90034000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr13:90032800-90033200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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