Variant report

Variant	rs9560309
Chromosome Location	chr13:90052845-90052846
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1576609	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16942872	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6492429	0.94[ASN][1000 genomes]
rs7320496	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7326581	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7338116	1.00[ASN][1000 genomes]
rs7997576	1.00[ASN][1000 genomes]
rs9555880	1.00[ASN][1000 genomes]
rs9555883	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9555885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9555886	1.00[ASN][1000 genomes]
rs9560303	0.96[ASN][1000 genomes]
rs9560304	1.00[ASN][1000 genomes]
rs9560308	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9560311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9588604	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832676	chr13:89941212-90090424	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv428613	chr13:90012119-90165711	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv900861	chr13:90037467-90097555	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv533455	chr13:90041897-90255725	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90052800-90053000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr13:90052800-90053000	Enhancers	Fetal Brain Male	brain
3	chr13:90052800-90053000	Enhancers	Gastric	stomach
4	chr13:90052800-90053200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:90052800-90053200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:90052800-90053400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:90052800-90053400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr13:90052800-90054000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:90052800-90054000	Enhancers	Primary hematopoietic stem cells	blood
10	chr13:90052800-90054200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:90052800-90054200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr13:90052800-90054200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr13:90052800-90054200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:90052800-90054600	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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