Variant report

Variant	rs9560311
Chromosome Location	chr13:90053652-90053653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1576609	1.00[ASN][1000 genomes]
rs16942872	1.00[ASN][1000 genomes]
rs6492429	0.94[ASN][1000 genomes]
rs7320496	1.00[ASN][1000 genomes]
rs7326581	1.00[ASN][1000 genomes]
rs7338116	1.00[ASN][1000 genomes]
rs7997576	1.00[ASN][1000 genomes]
rs9555880	1.00[ASN][1000 genomes]
rs9555883	1.00[ASN][1000 genomes]
rs9555885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9555886	1.00[ASN][1000 genomes]
rs9560303	0.96[ASN][1000 genomes]
rs9560304	1.00[ASN][1000 genomes]
rs9560308	1.00[ASN][1000 genomes]
rs9560309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9588604	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832676	chr13:89941212-90090424	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv428613	chr13:90012119-90165711	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv900861	chr13:90037467-90097555	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv533455	chr13:90041897-90255725	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90052800-90054000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:90052800-90054000	Enhancers	Primary hematopoietic stem cells	blood
3	chr13:90052800-90054200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:90052800-90054200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr13:90052800-90054200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr13:90052800-90054200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:90052800-90054600	Enhancers	Hela-S3	cervix
8	chr13:90053000-90053800	Weak transcription	Gastric	stomach
9	chr13:90053000-90054200	Enhancers	NHEK	skin
10	chr13:90053000-90059200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr13:90053200-90054000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:90053200-90054000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr13:90053400-90053800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:90053400-90053800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:90053400-90053800	Flanking Active TSS	A549	lung
16	chr13:90053400-90054000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr13:90053400-90054000	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr13:90053400-90054000	Enhancers	HUVEC	blood vessel
19	chr13:90053400-90054000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr13:90053600-90054000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr13:90053600-90054000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr13:90053600-90054000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr13:90053600-90054000	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr13:90053600-90054000	Flanking Active TSS	Liver	Liver
25	chr13:90053600-90054000	Enhancers	Fetal Brain Male	brain
26	chr13:90053600-90054200	Enhancers	HMEC	breast

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