Variant report

Variant	rs6494067
Chromosome Location	chr15:59360008-59360009
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59352406..59354912-chr15:59358282..59360921,2	K562	blood:
2	chr15:59357692..59360268-chr15:59368607..59371254,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10518998	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11574500	1.00[CEU][hapmap];0.93[AMR][1000 genomes]
rs13498	0.93[AMR][1000 genomes]
rs16940958	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16940976	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16941012	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16941048	0.93[AMR][1000 genomes]
rs16941077	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs28739021	0.93[AMR][1000 genomes]
rs28739025	0.92[AMR][1000 genomes]
rs6494052	1.00[CEU][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes]
rs6494058	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7164061	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7171252	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173787	0.93[AMR][1000 genomes]
rs7173999	0.86[AMR][1000 genomes]
rs7174992	0.86[AMR][1000 genomes]
rs7175697	1.00[CEU][hapmap];0.93[AMR][1000 genomes]
rs7177112	1.00[CEU][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7180666	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7181728	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74017367	0.81[AMR][1000 genomes]
rs8026039	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8027376	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs8030514	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8030811	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8032299	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8035952	0.93[AMR][1000 genomes]
rs8040605	0.89[EUR][1000 genomes]
rs8041633	0.93[AMR][1000 genomes]
rs8042601	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv510663	chr15:59310676-59370041	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59326400-59365200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:59342400-59364400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:59342400-59365400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:59344200-59364400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:59344200-59364400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:59344400-59363200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr15:59344400-59364200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:59344400-59392800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:59344600-59363200	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr15:59344600-59363800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:59344600-59363800	Strong transcription	Fetal Thymus	thymus
12	chr15:59344800-59363000	Strong transcription	Hela-S3	cervix
13	chr15:59344800-59363200	Strong transcription	Primary B cells from cord blood	blood
14	chr15:59344800-59363800	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr15:59344800-59363800	Strong transcription	Dnd41	blood
16	chr15:59344800-59364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:59344800-59364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:59344800-59366400	Strong transcription	Placenta	Placenta
19	chr15:59344800-59370400	Strong transcription	Primary T cells from cord blood	blood
20	chr15:59345000-59363000	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:59345200-59363000	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr15:59345200-59363800	Strong transcription	HSMM	muscle
23	chr15:59345400-59363000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:59345400-59363800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr15:59345400-59365200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:59345800-59365200	Strong transcription	Fetal Intestine Large	intestine
27	chr15:59346600-59362000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:59347000-59360600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:59347800-59361000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr15:59347800-59364400	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr15:59348000-59364200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:59348600-59363000	Strong transcription	NH-A	brain
33	chr15:59349000-59366400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:59349000-59367400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr15:59350000-59363200	Strong transcription	Fetal Muscle Leg	muscle
36	chr15:59350600-59361800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:59350600-59362000	Strong transcription	Brain Germinal Matrix	brain
38	chr15:59350800-59361600	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:59350800-59384600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:59351000-59373200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr15:59351600-59362200	Strong transcription	Fetal Brain Female	brain
42	chr15:59352000-59360400	Strong transcription	Fetal Lung	lung
43	chr15:59352200-59360600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr15:59352200-59361600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:59352600-59361200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:59352600-59363800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:59353200-59361000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr15:59354000-59373200	Weak transcription	Small Intestine	intestine
49	chr15:59354000-59390600	Strong transcription	Primary B cells from peripheral blood	blood
50	chr15:59354400-59396800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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