Variant report

Variant	rs7180666
Chromosome Location	chr15:59364551-59364552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59363137..59365893-chr15:59366048..59368212,3	K562	blood:
2	chr15:59363187..59365209-chr15:59366425..59368215,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10518998	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11574500	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11574501	0.81[EUR][1000 genomes]
rs13498	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16940958	1.00[AMR][1000 genomes]
rs16940976	1.00[AMR][1000 genomes]
rs16941012	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16941048	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28383495	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28739021	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28739025	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6494052	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6494058	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6494067	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7164061	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7171252	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7173787	1.00[AMR][1000 genomes]
rs7173999	0.83[EUR][1000 genomes]
rs7174992	0.81[EUR][1000 genomes]
rs7175697	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7177112	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7181728	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74017367	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8026039	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8027376	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8030514	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8030811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8032299	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8035952	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8040605	0.86[AMR][1000 genomes]
rs8041633	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8042601	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv510663	chr15:59310676-59370041	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59326400-59365200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:59342400-59365400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:59344400-59392800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:59344800-59364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:59344800-59364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:59344800-59366400	Strong transcription	Placenta	Placenta
7	chr15:59344800-59370400	Strong transcription	Primary T cells from cord blood	blood
8	chr15:59345400-59365200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:59345800-59365200	Strong transcription	Fetal Intestine Large	intestine
10	chr15:59349000-59366400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:59349000-59367400	Strong transcription	Fetal Muscle Trunk	muscle
12	chr15:59350800-59384600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:59351000-59373200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:59354000-59373200	Weak transcription	Small Intestine	intestine
15	chr15:59354000-59390600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr15:59354400-59396800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:59355200-59373200	Weak transcription	Psoas Muscle	Psoas
18	chr15:59355400-59366600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:59355400-59373000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:59355400-59392800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr15:59355600-59373200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:59355600-59378400	Strong transcription	Osteobl	bone
23	chr15:59355600-59392800	Strong transcription	Liver	Liver
24	chr15:59355600-59396600	Weak transcription	Fetal Heart	heart
25	chr15:59355800-59366600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:59355800-59386800	Weak transcription	Stomach Mucosa	stomach
27	chr15:59356200-59375400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:59357200-59364600	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:59359400-59368200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr15:59359400-59373200	Weak transcription	Aorta	Aorta
31	chr15:59359400-59396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr15:59359600-59365200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:59359600-59365200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:59359600-59365200	Weak transcription	Left Ventricle	heart
35	chr15:59359600-59365600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr15:59359600-59368200	Weak transcription	Brain Angular Gyrus	brain
37	chr15:59359600-59368200	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:59359600-59368200	Weak transcription	Brain Substantia Nigra	brain
39	chr15:59359600-59373000	Weak transcription	Colonic Mucosa	Colon
40	chr15:59359600-59373200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr15:59359600-59373200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:59359800-59365000	Weak transcription	Ovary	ovary
43	chr15:59359800-59368200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:59359800-59373000	Weak transcription	Esophagus	oesophagus
45	chr15:59359800-59373000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:59359800-59373200	Weak transcription	Lung	lung
47	chr15:59359800-59373200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr15:59359800-59373200	Weak transcription	Right Ventricle	heart
49	chr15:59359800-59373200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr15:59360000-59373200	Weak transcription	Brain Cingulate Gyrus	brain

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