Variant report

Variant	rs7177112
Chromosome Location	chr15:59381847-59381848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59380681..59383146-chr15:59397198..59399314,3	K562	blood:
2	chr15:59355956..59358210-chr15:59380736..59383195,2	MCF-7	breast:
3	chr15:59380300..59383086-chr15:59385027..59387819,3	K562	blood:
4	chr15:59379895..59383086-chr15:59385027..59387819,3	K562	blood:

Variant related genes	Relation type
ENSG00000157456	Chromatin interaction
ENSG00000157450	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10518998	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11574500	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11574501	0.88[EUR][1000 genomes]
rs13498	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16940958	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs16940976	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16941012	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16941048	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16941077	1.00[CEU][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs28383495	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28739021	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28739025	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57164516	0.82[EUR][1000 genomes]
rs6494052	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6494058	1.00[CEU][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6494067	1.00[CEU][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7164061	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171252	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7173787	1.00[AMR][1000 genomes]
rs7173999	0.89[EUR][1000 genomes]
rs7175697	1.00[CEU][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7180666	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7181728	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017367	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8026039	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8027376	0.87[ASW][hapmap];1.00[CEU][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8030514	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030811	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8032299	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8035952	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8040605	0.86[AMR][1000 genomes]
rs8041633	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8042601	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59344400-59392800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:59350800-59384600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:59354000-59390600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr15:59354400-59396800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:59355400-59392800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr15:59355600-59392800	Strong transcription	Liver	Liver
7	chr15:59355600-59396600	Weak transcription	Fetal Heart	heart
8	chr15:59355800-59386800	Weak transcription	Stomach Mucosa	stomach
9	chr15:59359400-59396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:59364800-59392600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:59365800-59390600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:59366400-59390600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:59367400-59390800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:59367600-59390200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:59367600-59390600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:59367800-59389800	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:59368200-59389800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:59368200-59390200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:59368200-59392800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr15:59368600-59389800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:59370400-59383800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:59371600-59392800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:59371800-59389200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr15:59372400-59386000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:59372400-59386000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:59372400-59390400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:59373000-59386000	Strong transcription	Fetal Intestine Large	intestine
28	chr15:59373000-59386000	Strong transcription	Fetal Thymus	thymus
29	chr15:59373000-59389200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr15:59373000-59389200	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr15:59373000-59390400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:59373200-59382800	Strong transcription	Primary T cells from cord blood	blood
33	chr15:59373200-59386000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:59373600-59385000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:59373600-59387000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:59374000-59396800	Weak transcription	Ovary	ovary
37	chr15:59374200-59383800	Weak transcription	Lung	lung
38	chr15:59374200-59383800	Weak transcription	Psoas Muscle	Psoas
39	chr15:59374200-59389400	Weak transcription	Fetal Brain Male	brain
40	chr15:59374200-59396600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr15:59374200-59396800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:59374200-59396800	Weak transcription	Right Ventricle	heart
43	chr15:59374400-59382800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:59374400-59383800	Weak transcription	Small Intestine	intestine
45	chr15:59374400-59396800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:59376000-59389800	Strong transcription	Primary B cells from cord blood	blood
47	chr15:59376000-59389800	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr15:59376200-59389600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr15:59376400-59382000	Strong transcription	HSMM	muscle
50	chr15:59376600-59389200	Strong transcription	Fetal Lung	lung

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