Variant report

Variant	rs8026039
Chromosome Location	chr15:59395705-59395706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59391505..59393672-chr15:59394009..59396903,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10518998	1.00[EUR][1000 genomes]
rs11574500	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11574501	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13498	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16940958	0.85[AMR][1000 genomes]
rs16940976	0.85[AMR][1000 genomes]
rs16941012	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16941048	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16941077	0.88[EUR][1000 genomes]
rs28383495	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28739021	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28739025	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57164516	0.88[EUR][1000 genomes]
rs6494052	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6494058	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6494067	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7164061	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7171252	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7173787	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7173999	0.94[EUR][1000 genomes]
rs7174992	0.82[EUR][1000 genomes]
rs7175697	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7177112	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7180666	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7181728	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74017367	0.94[EUR][1000 genomes]
rs8027376	0.94[EUR][1000 genomes]
rs8030514	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8030811	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8032299	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8035952	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8041633	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8042601	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59354400-59396800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:59355600-59396600	Weak transcription	Fetal Heart	heart
3	chr15:59359400-59396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:59374000-59396800	Weak transcription	Ovary	ovary
5	chr15:59374200-59396600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:59374200-59396800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:59374200-59396800	Weak transcription	Right Ventricle	heart
8	chr15:59374400-59396800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:59377200-59397000	Weak transcription	Gastric	stomach
10	chr15:59379400-59396600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:59384200-59396400	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:59384200-59396600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:59384200-59396600	Weak transcription	NHLF	lung
14	chr15:59384200-59396800	Weak transcription	Lung	lung
15	chr15:59384200-59396800	Weak transcription	Pancreas	Pancrea
16	chr15:59384800-59396400	Weak transcription	K562	blood
17	chr15:59385200-59396800	Weak transcription	Psoas Muscle	Psoas
18	chr15:59385200-59396800	Weak transcription	Small Intestine	intestine
19	chr15:59385400-59396400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:59385400-59396600	Weak transcription	Brain Angular Gyrus	brain
21	chr15:59385400-59396600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:59385400-59396800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:59385400-59396800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:59385400-59396800	Weak transcription	Brain Germinal Matrix	brain
25	chr15:59385800-59396600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:59385800-59396800	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:59385800-59397000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:59385800-59397400	Weak transcription	Spleen	Spleen
29	chr15:59386600-59396400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:59387200-59396800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:59387400-59396600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr15:59387400-59396800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:59387800-59396400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr15:59387800-59396600	Weak transcription	NHEK	skin
35	chr15:59388000-59396400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:59388400-59396600	Weak transcription	Fetal Kidney	kidney
37	chr15:59388800-59396600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:59389200-59396400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr15:59389200-59396400	Weak transcription	Fetal Lung	lung
40	chr15:59389200-59396600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr15:59389200-59396600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:59389200-59396600	Weak transcription	Brain Anterior Caudate	brain
43	chr15:59389200-59396600	Weak transcription	Brain Hippocampus Middle	brain
44	chr15:59389200-59396600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr15:59389200-59396600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr15:59389200-59396600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr15:59389200-59396800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:59389200-59396800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:59389200-59396800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr15:59389200-59396800	Weak transcription	Primary T cells fromperipheralblood	blood

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