Variant report

Variant	rs6499241
Chromosome Location	chr16:69698803-69698804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11075726	0.81[ASN][1000 genomes]
rs11075729	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11640319	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11641686	0.80[ASN][1000 genomes]
rs11641722	0.80[ASN][1000 genomes]
rs12918548	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12933210	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1437134	0.81[AFR][1000 genomes]
rs1469908	0.82[AFR][1000 genomes]
rs1837016	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2017448	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2161630	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2917670	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2917671	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3848278	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45488899	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4633710	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55780735	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6499231	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7187634	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7189878	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7191292	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7192380	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7192543	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7204433	0.80[ASN][1000 genomes]
rs7205551	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8045432	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8049728	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8055756	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8061052	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8061725	0.80[ASN][1000 genomes]
rs9302604	0.81[ASN][1000 genomes]
rs9783756	0.80[ASN][1000 genomes]
rs9938213	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6499241	LOC440348	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:69654200-69703600	Weak transcription	Brain Angular Gyrus	brain
3	chr16:69654200-69705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr16:69654600-69705000	Weak transcription	Psoas Muscle	Psoas
5	chr16:69660400-69709600	Weak transcription	Fetal Brain Male	brain
6	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr16:69670800-69715400	Weak transcription	Aorta	Aorta
8	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr16:69678800-69705600	Weak transcription	Stomach Mucosa	stomach
10	chr16:69680400-69699000	Strong transcription	Placenta	Placenta
11	chr16:69680400-69699200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr16:69680600-69699200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr16:69680800-69699000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr16:69680800-69699200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr16:69680800-69699200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr16:69680800-69699200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:69680800-69699200	Strong transcription	Liver	Liver
18	chr16:69681000-69699200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr16:69681400-69705200	Weak transcription	Small Intestine	intestine
20	chr16:69681600-69703000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr16:69681600-69705400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr16:69681600-69709000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr16:69681600-69711200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr16:69681600-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:69681600-69725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr16:69684600-69699200	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr16:69684800-69699200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr16:69685000-69699200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr16:69685000-69724800	Weak transcription	Fetal Heart	heart
30	chr16:69686800-69699000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr16:69686800-69699200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr16:69686800-69699200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr16:69687200-69699200	Strong transcription	Fetal Muscle Leg	muscle
34	chr16:69688400-69700000	Weak transcription	Right Atrium	heart
35	chr16:69688600-69704600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr16:69688600-69725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr16:69688800-69703400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr16:69689800-69699000	Strong transcription	Fetal Intestine Small	intestine
39	chr16:69689800-69705200	Weak transcription	Brain Germinal Matrix	brain
40	chr16:69690000-69705600	Weak transcription	Fetal Brain Female	brain
41	chr16:69690200-69703000	Weak transcription	Pancreas	Pancrea
42	chr16:69690200-69705400	Weak transcription	Gastric	stomach
43	chr16:69690200-69725800	Weak transcription	Ovary	ovary
44	chr16:69690400-69705600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr16:69690600-69705400	Weak transcription	Spleen	Spleen
46	chr16:69690800-69703200	Weak transcription	Brain Anterior Caudate	brain
47	chr16:69690800-69704600	Weak transcription	Right Ventricle	heart
48	chr16:69690800-69712400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr16:69691000-69726400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr16:69691200-69703000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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