Variant report

Variant	rs7189878
Chromosome Location	chr16:69668983-69668984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:69661739..69663808-chr16:69668595..69670780,2	MCF-7	breast:
2	chr16:69412158..69414395-chr16:69667200..69670184,2	K562	blood:
3	chr16:69665807..69668565-chr16:69668907..69671600,2	K562	blood:
4	chr16:69665807..69668565-chr16:69668796..69671600,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11075729	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11640319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12918548	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12924052	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs12933210	0.80[AMR][1000 genomes]
rs1469908	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs2017448	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2161630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2917670	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2965749	0.83[JPT][hapmap]
rs3811348	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs3848278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs45488899	0.83[AMR][1000 genomes]
rs4633710	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55780735	0.84[AMR][1000 genomes]
rs6499241	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7186296	0.89[JPT][hapmap]
rs7187634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7191292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7192380	1.00[CEU][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7192543	0.86[EUR][1000 genomes]
rs7205551	0.84[EUR][1000 genomes]
rs8045432	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8049728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8055756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8061052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9302604	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9938213	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7189878	LOC440348	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69624200-69669600	Weak transcription	Ovary	ovary
2	chr16:69645000-69669600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr16:69645400-69669800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr16:69645800-69669600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr16:69645800-69681000	Weak transcription	Fetal Brain Female	brain
6	chr16:69647200-69669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr16:69647600-69670200	Weak transcription	Fetal Kidney	kidney
8	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr16:69647800-69669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr16:69647800-69669200	Weak transcription	Adipose Nuclei	Adipose
11	chr16:69648000-69669200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr16:69648000-69669600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr16:69650200-69670000	Weak transcription	Pancreas	Pancrea
14	chr16:69650200-69670200	Weak transcription	Gastric	stomach
15	chr16:69650200-69670200	Weak transcription	Spleen	Spleen
16	chr16:69650400-69669200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr16:69650600-69670000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr16:69653600-69669400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr16:69653600-69669800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr16:69653600-69670000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr16:69653600-69680800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr16:69653600-69689600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr16:69653800-69669200	Weak transcription	Fetal Muscle Leg	muscle
24	chr16:69653800-69670000	Weak transcription	Right Ventricle	heart
25	chr16:69653800-69670000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr16:69653800-69670000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr16:69653800-69670200	Weak transcription	Brain Germinal Matrix	brain
28	chr16:69654200-69669800	Weak transcription	Brain Anterior Caudate	brain
29	chr16:69654200-69670000	Weak transcription	Brain Hippocampus Middle	brain
30	chr16:69654200-69670200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr16:69654200-69703600	Weak transcription	Brain Angular Gyrus	brain
32	chr16:69654200-69705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr16:69654600-69705000	Weak transcription	Psoas Muscle	Psoas
34	chr16:69656000-69670600	Weak transcription	Small Intestine	intestine
35	chr16:69658800-69669000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr16:69659200-69670000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr16:69659800-69669400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr16:69660000-69669000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr16:69660200-69670200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr16:69660200-69670400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr16:69660200-69671800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr16:69660400-69670200	Weak transcription	NHLF	lung
43	chr16:69660400-69709600	Weak transcription	Fetal Brain Male	brain
44	chr16:69660600-69669200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr16:69660600-69670000	Weak transcription	Fetal Thymus	thymus
46	chr16:69660600-69670200	Strong transcription	HepG2	liver
47	chr16:69660600-69672200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr16:69660800-69669400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr16:69660800-69669600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr16:69660800-69669800	Weak transcription	Thymus	Thymus

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