Variant report

Variant	rs7187634
Chromosome Location	chr16:69663371-69663372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69661739..69663808-chr16:69668595..69670780,2	MCF-7	breast:
2	chr16:69661329..69663803-chr16:69664795..69667678,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11075726	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11075729	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11640319	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11641686	0.84[ASN][1000 genomes]
rs11641722	0.84[ASN][1000 genomes]
rs11648335	0.83[ASN][1000 genomes]
rs12599391	0.83[ASW][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];0.95[YRI][hapmap]
rs12918548	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12924052	0.84[CEU][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap]
rs12933210	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1364063	0.83[ASW][hapmap];0.87[LWK][hapmap];0.91[MKK][hapmap];0.95[YRI][hapmap]
rs1437134	0.83[ASW][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];0.89[YRI][hapmap]
rs1469908	0.84[CEU][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1837016	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2017448	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2161630	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs244415	0.83[ASW][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs244417	0.83[ASW][hapmap];0.86[LWK][hapmap];0.95[MKK][hapmap];0.95[YRI][hapmap]
rs244418	0.83[ASW][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs244420	0.83[ASW][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs2917670	0.85[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2917671	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2965749	0.84[JPT][hapmap];0.83[LWK][hapmap]
rs3811348	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs3848278	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs45488899	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4633710	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55780735	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57497992	0.84[ASN][1000 genomes]
rs6499231	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6499241	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6499244	0.89[YRI][hapmap]
rs669696	0.81[AFR][1000 genomes]
rs7186296	0.89[JPT][hapmap]
rs7189878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7191292	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7192380	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7192543	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7204433	0.84[ASN][1000 genomes]
rs7205551	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7359336	0.83[ASW][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];0.89[YRI][hapmap]
rs8045432	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8049728	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8055756	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8061052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8061725	0.84[ASN][1000 genomes]
rs862320	0.84[AFR][1000 genomes]
rs889398	0.83[MKK][hapmap]
rs9302604	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9783756	0.84[ASN][1000 genomes]
rs9938213	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7187634	LOC440348	Cis_chr	lymphoblastoid	RTeQTL
rs7187634	HSF4	cis	cerebellum	SCAN
rs7187634	CTD-2033A16.3	cis	Esophagus Mucosa	GTEx

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69624200-69669600	Weak transcription	Ovary	ovary
2	chr16:69639400-69663400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr16:69644800-69666600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr16:69645000-69669600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr16:69645400-69669800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr16:69645800-69669600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr16:69645800-69681000	Weak transcription	Fetal Brain Female	brain
8	chr16:69647200-69669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr16:69647600-69670200	Weak transcription	Fetal Kidney	kidney
10	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr16:69647800-69663400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr16:69647800-69669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr16:69647800-69669200	Weak transcription	Adipose Nuclei	Adipose
14	chr16:69648000-69669200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr16:69648000-69669600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr16:69648400-69668400	Weak transcription	HMEC	breast
17	chr16:69648800-69668400	Weak transcription	Dnd41	blood
18	chr16:69650200-69670000	Weak transcription	Pancreas	Pancrea
19	chr16:69650200-69670200	Weak transcription	Gastric	stomach
20	chr16:69650200-69670200	Weak transcription	Spleen	Spleen
21	chr16:69650400-69663400	Weak transcription	Lung	lung
22	chr16:69650400-69669200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr16:69650600-69663600	Weak transcription	Aorta	Aorta
24	chr16:69650600-69670000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr16:69652000-69664000	Weak transcription	Left Ventricle	heart
26	chr16:69653000-69668800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr16:69653600-69669400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr16:69653600-69669800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr16:69653600-69670000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr16:69653600-69680800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr16:69653600-69689600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr16:69653800-69664000	Weak transcription	Fetal Lung	lung
33	chr16:69653800-69669200	Weak transcription	Fetal Muscle Leg	muscle
34	chr16:69653800-69670000	Weak transcription	Right Ventricle	heart
35	chr16:69653800-69670000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr16:69653800-69670000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr16:69653800-69670200	Weak transcription	Brain Germinal Matrix	brain
38	chr16:69654000-69667400	Weak transcription	Colon Smooth Muscle	Colon
39	chr16:69654200-69669800	Weak transcription	Brain Anterior Caudate	brain
40	chr16:69654200-69670000	Weak transcription	Brain Hippocampus Middle	brain
41	chr16:69654200-69670200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr16:69654200-69703600	Weak transcription	Brain Angular Gyrus	brain
43	chr16:69654200-69705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr16:69654600-69705000	Weak transcription	Psoas Muscle	Psoas
45	chr16:69655000-69666800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr16:69655400-69667000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr16:69656000-69670600	Weak transcription	Small Intestine	intestine
48	chr16:69658400-69663400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr16:69658800-69669000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr16:69659200-69670000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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