Variant report

Variant	rs8061052
Chromosome Location	chr16:69656532-69656533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69654579..69657827-chr16:69659154..69662325,3	MCF-7	breast:
2	chr16:69655067..69657852-chr16:69657900..69660325,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11075726	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11075729	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11640319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11641686	0.84[ASN][1000 genomes]
rs11641722	0.84[ASN][1000 genomes]
rs11648335	0.83[ASN][1000 genomes]
rs12599391	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs12918548	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12924052	0.89[CEU][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap]
rs12933210	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1364063	0.95[YRI][hapmap]
rs1437134	0.89[YRI][hapmap]
rs1469908	0.92[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1837016	0.84[ASN][1000 genomes]
rs2017448	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2161630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs244415	0.89[YRI][hapmap]
rs244417	0.95[YRI][hapmap]
rs244418	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs244420	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs2917670	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2917671	0.84[ASN][1000 genomes]
rs2965749	0.84[JPT][hapmap]
rs3811348	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs3848278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs45488899	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4633710	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55780735	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57497992	0.84[ASN][1000 genomes]
rs6499231	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6499241	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6499244	0.90[YRI][hapmap]
rs669696	0.83[AFR][1000 genomes]
rs7186296	0.89[JPT][hapmap]
rs7187634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7189878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7191292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7192380	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7192543	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7204433	0.84[ASN][1000 genomes]
rs7205551	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7359336	0.89[YRI][hapmap]
rs8045432	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8049728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8055756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8061725	0.84[ASN][1000 genomes]
rs862320	0.85[AFR][1000 genomes]
rs9302604	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9783756	0.84[ASN][1000 genomes]
rs9938213	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8061052	LOC440348	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr16:69624200-69669600	Weak transcription	Ovary	ovary
5	chr16:69629200-69660000	Weak transcription	Primary B cells from cord blood	blood
6	chr16:69639400-69663400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr16:69644000-69657200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr16:69644800-69666600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr16:69645000-69669600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr16:69645400-69669800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr16:69645600-69660400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr16:69645800-69661400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr16:69645800-69669600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr16:69645800-69681000	Weak transcription	Fetal Brain Female	brain
15	chr16:69646600-69661400	Weak transcription	NH-A	brain
16	chr16:69647200-69669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr16:69647400-69660000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr16:69647400-69660000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr16:69647600-69660400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr16:69647600-69670200	Weak transcription	Fetal Kidney	kidney
21	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr16:69647800-69663400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr16:69647800-69669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr16:69647800-69669200	Weak transcription	Adipose Nuclei	Adipose
25	chr16:69648000-69669200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr16:69648000-69669600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr16:69648200-69659400	Weak transcription	Hela-S3	cervix
28	chr16:69648200-69660000	Weak transcription	NHDF-Ad	bronchial
29	chr16:69648400-69668400	Weak transcription	HMEC	breast
30	chr16:69648800-69659400	Weak transcription	NHEK	skin
31	chr16:69648800-69668400	Weak transcription	Dnd41	blood
32	chr16:69649800-69660000	Weak transcription	Liver	Liver
33	chr16:69650200-69670000	Weak transcription	Pancreas	Pancrea
34	chr16:69650200-69670200	Weak transcription	Gastric	stomach
35	chr16:69650200-69670200	Weak transcription	Spleen	Spleen
36	chr16:69650400-69663400	Weak transcription	Lung	lung
37	chr16:69650400-69669200	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr16:69650600-69659400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr16:69650600-69659400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr16:69650600-69660000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr16:69650600-69660000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr16:69650600-69660200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr16:69650600-69663200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr16:69650600-69663200	Weak transcription	Fetal Intestine Large	intestine
45	chr16:69650600-69663600	Weak transcription	Aorta	Aorta
46	chr16:69650600-69670000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr16:69650800-69659800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr16:69650800-69659800	Weak transcription	Placenta	Placenta
49	chr16:69650800-69663200	Weak transcription	Primary T cells from cord blood	blood
50	chr16:69651600-69662600	Weak transcription	Fetal Stomach	stomach

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