Variant report
| Variant | rs6532777 |
|---|---|
| Chromosome Location | chr4:99908929-99908930 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:99904805..99907417-chr4:99907702..99910047,2 | K562 | blood: | |
| 2 | chr4:99849065..99851957-chr4:99908579..99912810,4 | K562 | blood: | |
| 3 | chr4:99907380..99909328-chr4:99912135..99914456,2 | K562 | blood: | |
| 4 | chr4:99906747..99909134-chr4:99909881..99912158,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000238449 | Chromatin interaction |
| ENSG00000151247 | Chromatin interaction |
| ENSG00000263923 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10489130 | 0.96[YRI][hapmap];0.84[AMR][1000 genomes] |
| rs1377690 | 0.92[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs17028382 | 0.96[YRI][hapmap];0.92[AMR][1000 genomes] |
| rs17028421 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35933543 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57770074 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58521602 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs60513719 | 1.00[AMR][1000 genomes] |
| rs6822811 | 1.00[AMR][1000 genomes] |
| rs6834982 | 0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6844771 | 1.00[AMR][1000 genomes] |
| rs6856734 | 0.85[AFR][1000 genomes] |
| rs72908917 | 0.82[AFR][1000 genomes] |
| rs72908953 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72908961 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72908966 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72908968 | 0.84[AMR][1000 genomes] |
| rs72908992 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72908996 | 0.85[AMR][1000 genomes] |
| rs7667503 | 0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs7670154 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009017 | chr4:99669441-100406394 | Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:99908800-99909400 | Enhancers | K562 | blood |
