Variant report

Variant	rs7667503
Chromosome Location	chr4:99923436-99923437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99849620..99851902-chr4:99922850..99925334,3	K562	blood:
2	chr4:99923178..99925511-chr4:99928281..99930397,2	MCF-7	breast:
3	chr4:99921481..99924289-chr4:99969597..99972369,2	K562	blood:
4	chr4:99919795..99924184-chr4:99939427..99943074,3	K562	blood:
5	chr4:99848788..99852145-chr4:99922354..99925698,5	K562	blood:
6	chr4:99915508..99918687-chr4:99918792..99923436,6	MCF-7	breast:
7	chr4:99921531..99923816-chr4:100866487..100868953,2	K562	blood:

Variant related genes	Relation type
ENSG00000265213	Chromatin interaction
ENSG00000164024	Chromatin interaction
ENSG00000263923	Chromatin interaction
ENSG00000151247	Chromatin interaction
ENSG00000238449	Chromatin interaction
ENSG00000164031	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10489130	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1377690	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs17028382	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028421	1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs17028443	0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs28470942	0.83[AMR][1000 genomes]
rs28542574	0.83[AMR][1000 genomes]
rs35933543	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs57770074	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs58521602	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs60513719	0.92[AMR][1000 genomes]
rs6532777	0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6822811	0.92[AMR][1000 genomes]
rs6834982	0.95[YRI][hapmap];0.92[AMR][1000 genomes]
rs6844771	0.92[AMR][1000 genomes]
rs6856734	0.91[AFR][1000 genomes]
rs72908917	0.94[AFR][1000 genomes]
rs72908953	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72908961	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72908966	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72908968	0.91[AMR][1000 genomes]
rs72908992	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72908996	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7670154	0.96[YRI][hapmap];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99918000-99923600	Weak transcription	Gastric	stomach
2	chr4:99918000-99925400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:99918000-99928200	Weak transcription	Esophagus	oesophagus
4	chr4:99918200-99923600	Weak transcription	Psoas Muscle	Psoas
5	chr4:99918200-99925000	Weak transcription	Right Atrium	heart
6	chr4:99918200-99925400	Weak transcription	Aorta	Aorta
7	chr4:99918200-99927400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:99918200-99928200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:99918200-99928400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:99918200-99930200	Weak transcription	Fetal Brain Male	brain
11	chr4:99918200-99930200	Weak transcription	HSMM	muscle
12	chr4:99918200-99931000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:99918200-99931400	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:99918200-99935400	Weak transcription	Ovary	ovary
15	chr4:99918200-99935800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:99918200-99938000	Weak transcription	NHDF-Ad	bronchial
17	chr4:99918600-99923600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr4:99918600-99923600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr4:99918600-99924400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr4:99918600-99930200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:99918600-99930400	Weak transcription	Primary B cells from cord blood	blood
22	chr4:99918600-99937800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:99918600-99938600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr4:99918800-99923600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr4:99918800-99926400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:99918800-99932200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:99918800-99937800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:99919000-99923600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr4:99919000-99930200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:99919000-99930200	Weak transcription	Primary T cells from cord blood	blood
31	chr4:99919200-99924200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:99919200-99929600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:99919200-99930400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:99919200-99940000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr4:99919200-99942000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr4:99919400-99923600	Weak transcription	Fetal Lung	lung
37	chr4:99919400-99924600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr4:99919400-99931000	Weak transcription	Fetal Thymus	thymus
39	chr4:99919600-99930200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr4:99920000-99937800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:99920200-99923800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:99920400-99923600	Weak transcription	Fetal Intestine Small	intestine
43	chr4:99920400-99923600	Weak transcription	Left Ventricle	heart
44	chr4:99920400-99924000	Weak transcription	Fetal Intestine Large	intestine
45	chr4:99920400-99929600	Weak transcription	GM12878-XiMat	blood
46	chr4:99921200-99924400	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr4:99921600-99923800	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr4:99921600-99925200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr4:99921600-99927000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr4:99921800-99923600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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