Variant report

Variant	rs72908917
Chromosome Location	chr4:99901135-99901136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10489130	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1377690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028382	0.85[AFR][1000 genomes]
rs35933543	0.81[AFR][1000 genomes]
rs58521602	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6532777	0.82[AFR][1000 genomes]
rs6856734	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72908953	0.81[AFR][1000 genomes]
rs72908961	0.81[AFR][1000 genomes]
rs72908966	0.81[AFR][1000 genomes]
rs72908968	0.82[AMR][1000 genomes]
rs72908996	0.85[AFR][1000 genomes]
rs7667503	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99898400-99905600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:99898600-99901800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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