Variant report

Variant	rs6533845
Chromosome Location	chr4:79569765-79569766
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79568346..79573757-chr4:79695931..79699478,7	MCF-7	breast:
2	chr4:79563449..79567560-chr4:79569303..79574487,6	K562	blood:
3	chr4:79563690..79568625-chr4:79568843..79572048,4	K562	blood:

Variant related genes	Relation type
ENSG00000138756	Chromatin interaction
ENSG00000260278	Chromatin interaction
ENSG00000251442	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10019240	0.80[AMR][1000 genomes]
rs11724268	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11728013	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11731482	0.80[AMR][1000 genomes]
rs11733032	0.85[AMR][1000 genomes]
rs11736376	0.85[AMR][1000 genomes]
rs11736602	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11942573	0.80[AMR][1000 genomes]
rs12233694	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12233707	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12646646	0.84[AMR][1000 genomes]
rs12650411	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13120630	0.84[AMR][1000 genomes]
rs28597797	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4073678	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4073679	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4074674	0.80[AMR][1000 genomes]
rs4075927	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4077709	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6533842	0.85[AMR][1000 genomes]
rs6812227	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6814739	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6815344	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6819484	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6829198	0.84[AMR][1000 genomes]
rs6835210	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6840592	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6851341	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6854055	0.81[AMR][1000 genomes]
rs7670506	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79551400-79578200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:79564400-79571400	Weak transcription	Fetal Heart	heart
3	chr4:79564400-79577200	Weak transcription	Fetal Thymus	thymus
4	chr4:79564400-79589600	Weak transcription	Lung	lung
5	chr4:79566000-79573200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr4:79566800-79569800	Weak transcription	Small Intestine	intestine
7	chr4:79567200-79571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:79567400-79570000	Active TSS	Brain Anterior Caudate	brain
9	chr4:79567400-79570800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:79567600-79570200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:79567600-79573600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:79567800-79571000	Weak transcription	HSMMtube	muscle
13	chr4:79567800-79573600	Weak transcription	Brain Angular Gyrus	brain
14	chr4:79567800-79574000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:79567800-79578200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr4:79567800-79580400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:79567800-79583400	Weak transcription	Psoas Muscle	Psoas
18	chr4:79568000-79570000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:79568000-79570600	Weak transcription	NHLF	lung
20	chr4:79568000-79570800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:79568000-79571000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:79568000-79571000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:79568000-79571000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:79568000-79571000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:79568000-79571000	Weak transcription	Fetal Intestine Large	intestine
26	chr4:79568000-79571000	Weak transcription	Placenta	Placenta
27	chr4:79568000-79571000	Weak transcription	HSMM	muscle
28	chr4:79568000-79571000	Weak transcription	Osteobl	bone
29	chr4:79568000-79571400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:79568000-79571400	Enhancers	K562	blood
31	chr4:79568000-79571600	Weak transcription	Spleen	Spleen
32	chr4:79568000-79572800	Weak transcription	Fetal Lung	lung
33	chr4:79568000-79573600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:79568000-79573600	Weak transcription	Left Ventricle	heart
35	chr4:79568000-79573600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr4:79568000-79573800	Weak transcription	Brain Substantia Nigra	brain
37	chr4:79568000-79575600	Weak transcription	Fetal Muscle Leg	muscle
38	chr4:79568000-79578000	Enhancers	HUVEC	blood vessel
39	chr4:79568000-79582800	Weak transcription	Right Atrium	heart
40	chr4:79568200-79570000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr4:79568200-79570000	Weak transcription	NHEK	skin
42	chr4:79568200-79570800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:79568200-79570800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:79568200-79570800	Weak transcription	Hela-S3	cervix
45	chr4:79568200-79571000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:79568200-79571000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:79568200-79571000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:79568200-79571000	Weak transcription	NH-A	brain
49	chr4:79568200-79571400	Weak transcription	Adipose Nuclei	Adipose
50	chr4:79568200-79571800	Weak transcription	Brain Hippocampus Middle	brain

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