Variant report

Variant	rs4077709
Chromosome Location	chr4:79579410-79579411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:79578298..79580592-chr4:79591764..79593779,3	MCF-7	breast:
2	chr4:79578638..79580494-chr4:79607559..79609986,2	K562	blood:
3	chr4:79531804..79533751-chr4:79579184..79581879,2	K562	blood:
4	chr4:79577940..79580731-chr4:79581809..79584953,3	K562	blood:
5	chr4:79571438..79573249-chr4:79577975..79580336,2	MCF-7	breast:
6	chr4:79570181..79571951-chr4:79578780..79581511,2	K562	blood:
7	chr4:79567877..79571542-chr4:79579028..79581625,3	MCF-7	breast:
8	chr4:79567650..79570588-chr4:79578726..79581566,2	K562	blood:
9	chr4:79494191..79497379-chr4:79578006..79580422,3	K562	blood:
10	chr4:79577188..79580624-chr4:79581809..79584972,3	K562	blood:
11	chr4:79577461..79581484-chr4:79593008..79596742,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000251019	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10007186	0.95[EUR][1000 genomes]
rs10019240	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212636	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1107606	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1108907	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11724268	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724602	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11728013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731482	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733032	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11736376	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11736602	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942573	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233694	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233707	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643488	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12646646	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12650411	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12711032	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120630	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138005	0.87[EUR][1000 genomes]
rs1834518	0.81[EUR][1000 genomes]
rs1972024	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28597797	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34325799	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4073678	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073679	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074673	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074674	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075927	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270605	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4306980	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4353930	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4632683	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4643844	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975148	0.89[EUR][1000 genomes]
rs6533825	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6533835	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6533842	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6533845	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6811335	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6812227	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812441	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814739	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819484	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824014	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6829061	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6829198	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6834587	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6835210	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835998	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6836513	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838443	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840592	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845893	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846346	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6851341	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854055	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7317	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7657082	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7669674	0.87[AMR][1000 genomes]
rs7669866	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7670506	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7680749	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7680766	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7682984	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7689154	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7697461	0.80[EUR][1000 genomes]
rs9998136	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79564400-79589600	Weak transcription	Lung	lung
2	chr4:79567800-79580400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:79567800-79583400	Weak transcription	Psoas Muscle	Psoas
4	chr4:79568000-79582800	Weak transcription	Right Atrium	heart
5	chr4:79572800-79582800	Weak transcription	Hela-S3	cervix
6	chr4:79573800-79583200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:79573800-79583600	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:79573800-79584200	Weak transcription	Left Ventricle	heart
9	chr4:79573800-79587000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:79574000-79581800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:79574000-79582400	Weak transcription	Fetal Heart	heart
12	chr4:79574200-79580400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr4:79574200-79583000	Weak transcription	HSMMtube	muscle
14	chr4:79574400-79582600	Weak transcription	Brain Angular Gyrus	brain
15	chr4:79574400-79582800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:79574800-79580200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:79575000-79580400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:79575400-79581000	Enhancers	Adipose Nuclei	Adipose
19	chr4:79575800-79583200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:79575800-79583200	Enhancers	NHDF-Ad	bronchial
21	chr4:79576000-79580200	Weak transcription	Brain Hippocampus Middle	brain
22	chr4:79576200-79580200	Weak transcription	Brain Substantia Nigra	brain
23	chr4:79576600-79579600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr4:79576600-79580200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:79576600-79582600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:79577200-79580000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr4:79577200-79580000	Enhancers	Primary B cells from peripheral blood	blood
28	chr4:79577200-79580000	Enhancers	Fetal Thymus	thymus
29	chr4:79577200-79580200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr4:79577400-79580400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr4:79577600-79580000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr4:79577800-79580200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr4:79577800-79580600	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr4:79577800-79580600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr4:79577800-79583200	Enhancers	Osteobl	bone
36	chr4:79577800-79583400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:79578000-79579600	Flanking Active TSS	Primary T cells from cord blood	blood
38	chr4:79578000-79579600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:79578000-79579800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr4:79578200-79579600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr4:79578200-79579600	Enhancers	NH-A	brain
42	chr4:79578200-79579600	Enhancers	NHLF	lung
43	chr4:79578200-79579800	Enhancers	Thymus	Thymus
44	chr4:79578200-79580000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:79578200-79580000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr4:79578400-79580000	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr4:79578400-79580200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr4:79578400-79580400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr4:79578400-79580400	Weak transcription	Fetal Muscle Leg	muscle
50	chr4:79578400-79580600	Weak transcription	Rectal Mucosa Donor 31	rectum

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