Variant report

Variant	rs6835210
Chromosome Location	chr4:79570043-79570044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79568346..79573757-chr4:79695931..79699478,7	MCF-7	breast:
2	chr4:79563449..79567560-chr4:79569303..79574487,6	K562	blood:
3	chr4:79563690..79568625-chr4:79568843..79572048,4	K562	blood:

Variant related genes	Relation type
ENSG00000138756	Chromatin interaction
ENSG00000260278	Chromatin interaction
ENSG00000251442	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10001246	0.95[CEU][hapmap]
rs10007186	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10019240	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212636	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1107606	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1108907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11724268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724602	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11728013	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731482	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11733269	0.94[CEU][hapmap]
rs11736376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11736602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942573	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643488	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12646646	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12650411	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12711032	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120630	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138005	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs1834518	0.81[EUR][1000 genomes]
rs1972024	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28597797	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34325799	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4073678	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073679	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074673	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074674	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075927	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077709	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270605	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4306980	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4353930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4632683	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4643844	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975148	0.89[EUR][1000 genomes]
rs6533821	0.94[CEU][hapmap]
rs6533825	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6533835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6533842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6533845	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6533847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6811335	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6811782	0.88[JPT][hapmap]
rs6812227	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812441	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814739	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815344	0.81[AMR][1000 genomes]
rs6819484	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824014	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6829061	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6829198	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6834587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6835998	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6836513	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838443	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841654	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6845893	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846346	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6851341	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6858740	0.89[JPT][hapmap]
rs7317	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7657082	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7669674	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7669866	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7670506	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7680749	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7680766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7682984	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7689154	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7697461	0.80[EUR][1000 genomes]
rs9998136	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79551400-79578200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:79564400-79571400	Weak transcription	Fetal Heart	heart
3	chr4:79564400-79577200	Weak transcription	Fetal Thymus	thymus
4	chr4:79564400-79589600	Weak transcription	Lung	lung
5	chr4:79566000-79573200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr4:79567200-79571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:79567400-79570800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:79567600-79570200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:79567600-79573600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:79567800-79571000	Weak transcription	HSMMtube	muscle
11	chr4:79567800-79573600	Weak transcription	Brain Angular Gyrus	brain
12	chr4:79567800-79574000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:79567800-79578200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:79567800-79580400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:79567800-79583400	Weak transcription	Psoas Muscle	Psoas
16	chr4:79568000-79570600	Weak transcription	NHLF	lung
17	chr4:79568000-79570800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:79568000-79571000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:79568000-79571000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:79568000-79571000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:79568000-79571000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:79568000-79571000	Weak transcription	Fetal Intestine Large	intestine
23	chr4:79568000-79571000	Weak transcription	Placenta	Placenta
24	chr4:79568000-79571000	Weak transcription	HSMM	muscle
25	chr4:79568000-79571000	Weak transcription	Osteobl	bone
26	chr4:79568000-79571400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:79568000-79571400	Enhancers	K562	blood
28	chr4:79568000-79571600	Weak transcription	Spleen	Spleen
29	chr4:79568000-79572800	Weak transcription	Fetal Lung	lung
30	chr4:79568000-79573600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:79568000-79573600	Weak transcription	Left Ventricle	heart
32	chr4:79568000-79573600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:79568000-79573800	Weak transcription	Brain Substantia Nigra	brain
34	chr4:79568000-79575600	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:79568000-79578000	Enhancers	HUVEC	blood vessel
36	chr4:79568000-79582800	Weak transcription	Right Atrium	heart
37	chr4:79568200-79570800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:79568200-79570800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:79568200-79570800	Weak transcription	Hela-S3	cervix
40	chr4:79568200-79571000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:79568200-79571000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:79568200-79571000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:79568200-79571000	Weak transcription	NH-A	brain
44	chr4:79568200-79571400	Weak transcription	Adipose Nuclei	Adipose
45	chr4:79568200-79571800	Weak transcription	Brain Hippocampus Middle	brain
46	chr4:79568200-79573400	Weak transcription	Fetal Stomach	stomach
47	chr4:79568400-79570400	Enhancers	Primary B cells from peripheral blood	blood
48	chr4:79568400-79570800	Weak transcription	A549	lung
49	chr4:79568400-79570800	Weak transcription	HMEC	breast
50	chr4:79568800-79570200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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