Variant report
| Variant | rs1834518 |
|---|---|
| Chromosome Location | chr4:79616599-79616600 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000260278 | Chromatin interaction |
| ENSG00000138756 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10007186 | 0.86[EUR][1000 genomes] |
| rs10019240 | 0.86[EUR][1000 genomes] |
| rs11724268 | 0.81[EUR][1000 genomes] |
| rs11728013 | 0.81[EUR][1000 genomes] |
| rs11731482 | 0.86[EUR][1000 genomes] |
| rs11736602 | 0.81[EUR][1000 genomes] |
| rs11942573 | 0.86[EUR][1000 genomes] |
| rs12233694 | 0.81[EUR][1000 genomes] |
| rs12233707 | 0.81[EUR][1000 genomes] |
| rs12650411 | 0.80[EUR][1000 genomes] |
| rs12711032 | 0.86[EUR][1000 genomes] |
| rs13120630 | 0.86[EUR][1000 genomes] |
| rs34325799 | 0.86[EUR][1000 genomes] |
| rs4073678 | 0.80[EUR][1000 genomes] |
| rs4073679 | 0.81[EUR][1000 genomes] |
| rs4074673 | 0.86[EUR][1000 genomes] |
| rs4074674 | 0.86[EUR][1000 genomes] |
| rs4075927 | 0.81[EUR][1000 genomes] |
| rs4077709 | 0.81[EUR][1000 genomes] |
| rs4270605 | 0.86[EUR][1000 genomes] |
| rs4632683 | 0.85[EUR][1000 genomes] |
| rs4643844 | 0.86[EUR][1000 genomes] |
| rs6812227 | 0.86[EUR][1000 genomes] |
| rs6812441 | 0.86[EUR][1000 genomes] |
| rs6814739 | 0.81[EUR][1000 genomes] |
| rs6819484 | 0.81[EUR][1000 genomes] |
| rs6835210 | 0.81[EUR][1000 genomes] |
| rs6836513 | 0.86[EUR][1000 genomes] |
| rs6838443 | 0.85[EUR][1000 genomes] |
| rs6840592 | 0.81[EUR][1000 genomes] |
| rs6845893 | 0.86[EUR][1000 genomes] |
| rs6851341 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009633 | chr4:78887573-79652236 | Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:79610600-79617800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 2 | chr4:79613400-79616600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 3 | chr4:79614600-79618200 | Enhancers | K562 | blood |
