Variant report

Variant	rs11731482
Chromosome Location	chr4:79588301-79588302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79583593..79586061-chr4:79586877..79589613,2	MCF-7	breast:
2	chr4:79587769..79591719-chr4:79695513..79697602,3	K562	blood:
3	chr4:79581359..79584183-chr4:79585994..79588670,2	K562	blood:
4	chr4:79580127..79585145-chr4:79585599..79588670,4	K562	blood:
5	chr4:79575433..79577300-chr4:79588056..79590576,2	MCF-7	breast:
6	chr4:79571552..79573969-chr4:79585909..79589158,3	K562	blood:

Variant related genes	Relation type
ENSG00000260278	Chromatin interaction
ENSG00000138756	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10007186	1.00[EUR][1000 genomes]
rs10019240	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212636	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1107606	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1108907	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11724268	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724602	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11728013	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733032	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11736376	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11736602	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942573	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233694	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233707	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643488	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12646646	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12650411	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12711032	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120630	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138005	0.82[EUR][1000 genomes]
rs1834518	0.86[EUR][1000 genomes]
rs1972024	0.83[EUR][1000 genomes]
rs28597797	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34325799	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4073678	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073679	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074673	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074674	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075927	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077709	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270605	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4306980	0.83[EUR][1000 genomes]
rs4353930	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4632683	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4643844	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975148	0.85[EUR][1000 genomes]
rs6533825	0.83[EUR][1000 genomes]
rs6533835	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6533842	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6533845	0.80[AMR][1000 genomes]
rs6811335	0.83[EUR][1000 genomes]
rs6812227	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812441	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814739	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819484	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824014	0.83[EUR][1000 genomes]
rs6829061	0.83[EUR][1000 genomes]
rs6829198	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6834587	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6835210	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835998	0.83[EUR][1000 genomes]
rs6836513	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838443	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840592	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845893	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846346	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6851341	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854055	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7317	0.83[EUR][1000 genomes]
rs7657082	0.83[EUR][1000 genomes]
rs7669674	0.80[AMR][1000 genomes]
rs7669866	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7670506	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7680749	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7680766	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7682984	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7689154	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9998136	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79564400-79589600	Weak transcription	Lung	lung
2	chr4:79582000-79588400	Enhancers	Fetal Intestine Large	intestine
3	chr4:79582000-79588600	Enhancers	Fetal Intestine Small	intestine
4	chr4:79583800-79588600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:79583800-79589000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr4:79583800-79593000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:79584200-79589000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:79584200-79589200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:79584400-79589000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:79584400-79589200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:79584400-79589200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:79584400-79589200	Weak transcription	NHDF-Ad	bronchial
13	chr4:79585800-79590400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:79586000-79590000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr4:79586000-79590400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:79586000-79590400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:79586000-79590400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:79586800-79590800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr4:79586800-79595400	Enhancers	Primary B cells from peripheral blood	blood
20	chr4:79587200-79588400	Enhancers	Primary B cells from cord blood	blood
21	chr4:79587200-79590800	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr4:79587400-79589800	Enhancers	HUVEC	blood vessel
23	chr4:79587600-79590000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr4:79587800-79588600	Enhancers	GM12878-XiMat	blood
25	chr4:79587800-79589600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr4:79587800-79589800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:79587800-79590000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr4:79587800-79590200	Enhancers	Primary hematopoietic stem cells	blood
29	chr4:79588000-79588400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:79588000-79588400	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr4:79588000-79588800	Enhancers	Placenta	Placenta
32	chr4:79588000-79589400	Enhancers	Primary T cells from cord blood	blood
33	chr4:79588000-79590000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr4:79588000-79590000	Enhancers	Spleen	Spleen
35	chr4:79588000-79590200	Enhancers	Adipose Nuclei	Adipose
36	chr4:79588000-79594400	Enhancers	K562	blood
37	chr4:79588200-79588400	Enhancers	Fetal Lung	lung
38	chr4:79588200-79589000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr4:79588200-79589200	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr4:79588200-79589400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links