Variant report

Variant	rs7669866
Chromosome Location	chr4:79568125-79568126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79565693..79569294-chr4:79696000..79698136,3	K562	blood:
2	chr4:79557761..79562686-chr4:79563110..79568703,4	K562	blood:
3	chr4:79563690..79568625-chr4:79568843..79572048,4	K562	blood:
4	chr4:79562196..79569044-chr4:79695847..79699797,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260278	Chromatin interaction
ENSG00000251019	Chromatin interaction
ENSG00000238816	Chromatin interaction
ENSG00000138756	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10007186	0.80[EUR][1000 genomes]
rs10019240	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10212636	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1107606	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1108907	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11724268	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11724602	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11728013	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11731482	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11733032	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11736376	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11736602	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11942573	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12233694	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12233707	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12643488	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12646646	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12650411	0.84[EUR][1000 genomes]
rs12711032	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13120630	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13138005	0.90[EUR][1000 genomes]
rs1972024	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28597797	0.83[EUR][1000 genomes]
rs34325799	0.80[EUR][1000 genomes]
rs4073678	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4073679	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4074673	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4074674	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4075927	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4077709	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4270605	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4306980	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4353930	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4632683	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4643844	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4975148	0.93[EUR][1000 genomes]
rs6533825	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6533835	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6533842	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6811335	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6812227	0.80[EUR][1000 genomes]
rs6812441	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6814739	0.84[EUR][1000 genomes]
rs6819484	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6824014	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6829061	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6829198	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6834587	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6835210	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6835998	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6836513	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6838443	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6840592	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6845893	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6846346	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6851341	0.84[EUR][1000 genomes]
rs6854055	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7317	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7657082	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7669674	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7670506	0.84[EUR][1000 genomes]
rs7680749	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7680766	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7682984	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7689154	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7697461	0.86[EUR][1000 genomes]
rs9998136	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79551400-79578200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:79563200-79568800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:79564400-79571400	Weak transcription	Fetal Heart	heart
4	chr4:79564400-79577200	Weak transcription	Fetal Thymus	thymus
5	chr4:79564400-79589600	Weak transcription	Lung	lung
6	chr4:79565800-79569000	Weak transcription	Primary T cells from cord blood	blood
7	chr4:79566000-79573200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr4:79566200-79569400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:79566400-79569200	Enhancers	Duodenum Mucosa	Duodenum
10	chr4:79566600-79568200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr4:79566600-79568200	Enhancers	Fetal Stomach	stomach
12	chr4:79566800-79569800	Weak transcription	Small Intestine	intestine
13	chr4:79567200-79568200	Active TSS	Brain Hippocampus Middle	brain
14	chr4:79567200-79571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:79567400-79568200	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr4:79567400-79570000	Active TSS	Brain Anterior Caudate	brain
17	chr4:79567400-79570800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:79567600-79568200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:79567600-79568400	Enhancers	NHDF-Ad	bronchial
20	chr4:79567600-79570200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:79567600-79573600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:79567800-79568200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:79567800-79568200	Enhancers	NH-A	brain
24	chr4:79567800-79568400	Enhancers	HMEC	breast
25	chr4:79567800-79568800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:79567800-79569600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:79567800-79571000	Weak transcription	HSMMtube	muscle
28	chr4:79567800-79573600	Weak transcription	Brain Angular Gyrus	brain
29	chr4:79567800-79574000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:79567800-79578200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr4:79567800-79580400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr4:79567800-79583400	Weak transcription	Psoas Muscle	Psoas
33	chr4:79568000-79568200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:79568000-79568200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:79568000-79568200	Enhancers	Adipose Nuclei	Adipose
36	chr4:79568000-79568200	Enhancers	Hela-S3	cervix
37	chr4:79568000-79568200	Enhancers	NHEK	skin
38	chr4:79568000-79568400	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr4:79568000-79568400	Weak transcription	Primary B cells from peripheral blood	blood
40	chr4:79568000-79568400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:79568000-79568400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr4:79568000-79568400	Enhancers	A549	lung
43	chr4:79568000-79568400	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr4:79568000-79569000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:79568000-79569000	Weak transcription	Primary B cells from cord blood	blood
46	chr4:79568000-79569200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr4:79568000-79569200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr4:79568000-79569200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr4:79568000-79570000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr4:79568000-79570600	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links