Variant report

Variant	rs4632683
Chromosome Location	chr4:79586494-79586495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79581359..79584183-chr4:79585994..79588670,2	K562	blood:
2	chr4:79573609..79576927-chr4:79583175..79586831,3	MCF-7	breast:
3	chr4:79580127..79585145-chr4:79585599..79588670,4	K562	blood:
4	chr4:79571552..79573969-chr4:79585909..79589158,3	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10007186	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10019240	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212636	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1107606	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1108907	0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11724268	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724602	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11728013	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731482	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733032	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11736376	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11736602	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942573	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233694	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233707	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643488	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12646646	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12650411	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12711032	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120630	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138005	0.82[EUR][1000 genomes]
rs1834518	0.85[EUR][1000 genomes]
rs1972024	0.82[EUR][1000 genomes]
rs28597797	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34325799	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4073678	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073679	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074673	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074674	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075927	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077709	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270605	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4306980	0.82[EUR][1000 genomes]
rs4353930	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4643844	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975148	0.84[EUR][1000 genomes]
rs6533825	0.88[YRI][hapmap];0.82[EUR][1000 genomes]
rs6533835	0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6533842	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6811335	0.82[EUR][1000 genomes]
rs6812227	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812441	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814739	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819484	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824014	0.82[EUR][1000 genomes]
rs6829061	0.82[EUR][1000 genomes]
rs6829198	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6834587	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6835210	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835998	0.82[EUR][1000 genomes]
rs6836513	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838443	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840592	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845893	0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846346	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6851341	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854055	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7317	0.86[YRI][hapmap];0.82[EUR][1000 genomes]
rs7657082	0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7669674	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7669866	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7670506	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7680749	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7680766	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7682984	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7689154	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9998136	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79564400-79589600	Weak transcription	Lung	lung
2	chr4:79573800-79587000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:79579400-79588000	Weak transcription	Spleen	Spleen
4	chr4:79580000-79588000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:79580000-79588000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:79582000-79588400	Enhancers	Fetal Intestine Large	intestine
7	chr4:79582000-79588600	Enhancers	Fetal Intestine Small	intestine
8	chr4:79582400-79586600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:79582800-79586800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:79583000-79587000	Enhancers	K562	blood
11	chr4:79583600-79586800	Weak transcription	Small Intestine	intestine
12	chr4:79583600-79588200	Weak transcription	Fetal Lung	lung
13	chr4:79583800-79588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:79583800-79588200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:79583800-79588200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:79583800-79588600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:79583800-79589000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:79583800-79593000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:79584000-79588000	Weak transcription	Primary T cells from cord blood	blood
20	chr4:79584200-79589000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr4:79584200-79589200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:79584400-79587200	Weak transcription	Primary B cells from cord blood	blood
23	chr4:79584400-79587400	Weak transcription	HUVEC	blood vessel
24	chr4:79584400-79587600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:79584400-79588000	Weak transcription	Adipose Nuclei	Adipose
26	chr4:79584400-79589000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:79584400-79589200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:79584400-79589200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr4:79584400-79589200	Weak transcription	NHDF-Ad	bronchial
30	chr4:79584600-79587800	Weak transcription	GM12878-XiMat	blood
31	chr4:79585000-79586600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:79585200-79586800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr4:79585200-79588000	Weak transcription	Brain Hippocampus Middle	brain
34	chr4:79585400-79586600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr4:79585400-79586800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr4:79585400-79588000	Weak transcription	Placenta	Placenta
37	chr4:79585800-79587800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:79585800-79590400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr4:79586000-79590000	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr4:79586000-79590400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr4:79586000-79590400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr4:79586000-79590400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr4:79586400-79586600	Enhancers	Monocytes-CD14+_RO01746	blood

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