The 2.0 version of rSNPBase

Variant report

Variant rs6540552
Chromosome Location chr1:209927710-209927711
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:209921400-209929800 Weak transcription Right Atrium heart
2 chr1:209921400-209930000 Weak transcription Right Ventricle heart
3 chr1:209921800-209929600 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr1:209921800-209930000 Weak transcription Stomach Mucosa stomach
5 chr1:209921800-209940800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr1:209921800-209942000 Weak transcription Pancreas Pancrea
7 chr1:209922000-209928800 Enhancers Primary neutrophils fromperipheralblood blood
8 chr1:209922400-209931200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:209925400-209928400 Weak transcription Thymus Thymus
10 chr1:209925400-209929000 Enhancers Primary T helper naive cells fromperipheralblood blood
11 chr1:209925600-209928600 Enhancers Primary T helper naive cells from peripheral blood blood
12 chr1:209925600-209929000 Enhancers Primary T killer naive cells fromperipheralblood blood
13 chr1:209925800-209928400 Enhancers Primary T killer memory cells from peripheral blood blood
14 chr1:209925800-209928400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr1:209925800-209928400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr1:209925800-209928800 Enhancers Primary T helper cells PMA-I stimulated --
17 chr1:209925800-209928800 Weak transcription Fetal Intestine Small intestine
18 chr1:209926000-209927800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr1:209926000-209927800 Weak transcription Fetal Thymus thymus
20 chr1:209926000-209928200 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr1:209926000-209928400 Weak transcription Primary hematopoietic stem cells blood
22 chr1:209926000-209928400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr1:209926000-209928600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
24 chr1:209926000-209928800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
25 chr1:209926000-209928800 Enhancers Primary T regulatory cells fromperipheralblood blood
26 chr1:209926000-209928800 Weak transcription Duodenum Mucosa Duodenum
27 chr1:209926000-209929000 Enhancers Primary T helper cells fromperipheralblood blood
28 chr1:209926000-209929600 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr1:209926200-209927800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr1:209926200-209928600 Weak transcription Fetal Intestine Large intestine
31 chr1:209926600-209927800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr1:209926600-209928200 Weak transcription Primary B cells from cord blood blood
33 chr1:209926600-209928200 Weak transcription Primary B cells from peripheral blood blood
34 chr1:209926800-209927800 Weak transcription Primary monocytes fromperipheralblood blood
35 chr1:209926800-209927800 Weak transcription Primary T cells from cord blood blood
36 chr1:209926800-209927800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr1:209926800-209927800 Weak transcription Monocytes-CD14+_RO01746 blood
38 chr1:209926800-209928200 Weak transcription GM12878-XiMat blood
39 chr1:209927600-209929000 Enhancers Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015