The 2.0 version of rSNPBase

Variant report

Variant rs9430017
Chromosome Location chr1:209925058-209925059
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:209921400-209925200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:209921400-209929800 Weak transcription Right Atrium heart
3 chr1:209921400-209930000 Weak transcription Right Ventricle heart
4 chr1:209921600-209926600 Enhancers Primary T cells fromperipheralblood blood
5 chr1:209921600-209926600 Enhancers Primary Natural Killer cells fromperipheralblood blood
6 chr1:209921600-209926800 Enhancers Primary monocytes fromperipheralblood blood
7 chr1:209921800-209925400 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:209921800-209925400 Weak transcription K562 blood
9 chr1:209921800-209929600 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr1:209921800-209930000 Weak transcription Stomach Mucosa stomach
11 chr1:209921800-209940800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:209921800-209942000 Weak transcription Pancreas Pancrea
13 chr1:209922000-209928800 Enhancers Primary neutrophils fromperipheralblood blood
14 chr1:209922400-209931200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:209923400-209925200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
16 chr1:209923400-209925200 Weak transcription Fetal Intestine Small intestine
17 chr1:209923800-209926600 Enhancers Primary B cells from cord blood blood
18 chr1:209923800-209926600 Enhancers Primary B cells from peripheral blood blood
19 chr1:209924200-209925200 Enhancers Monocytes-CD14+_RO01746 blood
20 chr1:209924200-209925400 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
21 chr1:209924200-209926000 Enhancers Primary hematopoietic stem cells blood
22 chr1:209924200-209926000 Enhancers Duodenum Mucosa Duodenum
23 chr1:209924600-209925600 Flanking Active TSS Primary T cells from cord blood blood
24 chr1:209924600-209926000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
25 chr1:209924600-209926000 Flanking Active TSS GM12878-XiMat blood
26 chr1:209924800-209925400 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
27 chr1:209924800-209925400 Active TSS Rectal Mucosa Donor 29 rectum
28 chr1:209924800-209925400 Enhancers Thymus Thymus
29 chr1:209924800-209925600 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
30 chr1:209924800-209925800 Flanking Active TSS Primary T helper cells PMA-I stimulated --
31 chr1:209924800-209925800 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
32 chr1:209924800-209926000 Enhancers Primary hematopoietic stem cells short term culture blood
33 chr1:209924800-209926000 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
34 chr1:209924800-209926000 Flanking Active TSS Primary T helper cells fromperipheralblood blood
35 chr1:209924800-209926000 Enhancers Fetal Thymus thymus
36 chr1:209925000-209925200 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
37 chr1:209925000-209925200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr1:209925000-209925400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:209925000-209926000 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
40 chr1:209925000-209926200 Enhancers Fetal Intestine Large intestine

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Last update: Aug 31, 2015