The 2.0 version of rSNPBase

Variant report

Variant rs6540838
Chromosome Location chr1:214641548-214641549
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214613000-214649400 Weak transcription Lung lung
2 chr1:214625800-214644800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr1:214629200-214644800 Weak transcription Psoas Muscle Psoas
4 chr1:214634400-214644400 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr1:214634400-214645000 Weak transcription HUVEC blood vessel
6 chr1:214634400-214646200 Weak transcription iPS-18 Cell Line embryonic stem cell
7 chr1:214635800-214645000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr1:214637200-214645000 Weak transcription Esophagus oesophagus
9 chr1:214638200-214642200 Weak transcription HUES6 Cell Line embryonic stem cell
10 chr1:214638200-214644400 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr1:214638200-214644400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr1:214638200-214645400 Weak transcription Left Ventricle heart
13 chr1:214638200-214645600 Weak transcription Fetal Muscle Trunk muscle
14 chr1:214638200-214645800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr1:214638200-214647400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:214638200-214649200 Weak transcription Aorta Aorta
17 chr1:214638400-214644600 Weak transcription HSMM muscle
18 chr1:214638400-214649000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr1:214638400-214649400 Weak transcription Right Ventricle heart
20 chr1:214638600-214646800 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr1:214638800-214642800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:214639400-214642800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr1:214639600-214642200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:214639800-214643000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:214640200-214642200 Weak transcription Fetal Heart heart
26 chr1:214640200-214644800 Weak transcription H9 Cell Line embryonic stem cell
27 chr1:214640200-214646600 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:214640200-214647400 Weak transcription Fetal Kidney kidney
29 chr1:214640200-214649400 Weak transcription Placenta Placenta
30 chr1:214640200-214650000 Weak transcription Fetal Lung lung
31 chr1:214640400-214642200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:214640400-214643200 Weak transcription Small Intestine intestine
33 chr1:214640400-214644800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr1:214640400-214644800 Weak transcription Stomach Mucosa stomach
35 chr1:214640400-214645000 Weak transcription Adipose Nuclei Adipose
36 chr1:214640400-214649400 Weak transcription Pancreas Pancrea
37 chr1:214640800-214641600 Enhancers A549 lung
38 chr1:214640800-214641600 Enhancers NHEK skin
39 chr1:214640800-214644600 Weak transcription Muscle Satellite Cultured Cells --
40 chr1:214640800-214644600 Weak transcription Fetal Intestine Large intestine
41 chr1:214640800-214644600 Weak transcription Fetal Intestine Small intestine
42 chr1:214640800-214644800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:214640800-214644800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr1:214640800-214644800 Weak transcription Placenta Amnion Placenta Amnion
45 chr1:214640800-214644800 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr1:214640800-214645000 Weak transcription Skeletal Muscle Female skeletal muscle
47 chr1:214640800-214645200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr1:214640800-214645400 Weak transcription HSMMtube muscle
49 chr1:214640800-214645600 Weak transcription NHLF lung
50 chr1:214640800-214645800 Weak transcription NH-A brain

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Last update: Aug 31, 2015