Variant report

Variant	rs4655352
Chromosome Location	chr1:214645353-214645354
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214640762..214643039-chr1:214644769..214647114,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10157143	1.00[YRI][hapmap]
rs10158378	0.92[YRI][hapmap]
rs10158490	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10159086	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10159464	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10494980	0.85[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10864100	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10864101	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864102	1.00[CEU][hapmap];0.92[JPT][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864103	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120329	0.91[CEU][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120330	0.91[CEU][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120331	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120332	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120333	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12068677	0.84[CEU][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12096551	0.90[CEU][hapmap];0.80[CHB][hapmap];0.92[JPT][hapmap]
rs12128034	0.84[CEU][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12739305	0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12739336	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743237	0.84[CEU][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12757384	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12757776	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023030	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17790515	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17790562	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4145623	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4233301	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4233302	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4233303	0.87[ASN][1000 genomes]
rs4233304	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4233306	0.86[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4269744	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4284238	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4474219	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4480328	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4571940	0.85[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4655250	0.84[CEU][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655251	0.91[CEU][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655252	0.84[CEU][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655253	0.84[CEU][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655254	0.91[CEU][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655255	0.84[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655256	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655258	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655259	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655347	0.84[CEU][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655348	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655349	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655350	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655351	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655355	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5020616	0.91[CEU][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5020617	0.91[CEU][hapmap];0.80[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58530653	0.82[AFR][1000 genomes]
rs60798187	0.82[AFR][1000 genomes]
rs61819616	0.82[AFR][1000 genomes]
rs61819617	0.82[AFR][1000 genomes]
rs61819618	0.82[AFR][1000 genomes]
rs61819622	0.82[AFR][1000 genomes]
rs61819625	0.82[AFR][1000 genomes]
rs61819627	0.82[AFR][1000 genomes]
rs61819628	0.82[AFR][1000 genomes]
rs61819630	0.82[AFR][1000 genomes]
rs61819631	0.82[AFR][1000 genomes]
rs61819632	0.82[AFR][1000 genomes]
rs6540830	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6540835	0.91[CEU][hapmap];0.92[JPT][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540838	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540841	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6661786	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6668440	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6676807	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6676956	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6682627	0.85[CEU][hapmap]
rs6682847	0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684018	0.85[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6685434	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6689084	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691633	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139887	0.82[AFR][1000 genomes]
rs74139888	0.82[AFR][1000 genomes]
rs74139889	0.82[AFR][1000 genomes]
rs7518513	0.82[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7525020	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7527320	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7528315	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531610	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7540188	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7540288	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214613000-214649400	Weak transcription	Lung	lung
2	chr1:214634400-214646200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:214638200-214645400	Weak transcription	Left Ventricle	heart
4	chr1:214638200-214645600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:214638200-214645800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:214638200-214647400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:214638200-214649200	Weak transcription	Aorta	Aorta
8	chr1:214638400-214649000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:214638400-214649400	Weak transcription	Right Ventricle	heart
10	chr1:214638600-214646800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:214640200-214646600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:214640200-214647400	Weak transcription	Fetal Kidney	kidney
13	chr1:214640200-214649400	Weak transcription	Placenta	Placenta
14	chr1:214640200-214650000	Weak transcription	Fetal Lung	lung
15	chr1:214640400-214649400	Weak transcription	Pancreas	Pancrea
16	chr1:214640800-214645400	Weak transcription	HSMMtube	muscle
17	chr1:214640800-214645600	Weak transcription	NHLF	lung
18	chr1:214640800-214645800	Weak transcription	NH-A	brain
19	chr1:214640800-214645800	Weak transcription	NHDF-Ad	bronchial
20	chr1:214640800-214648000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr1:214640800-214649000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr1:214640800-214649400	Weak transcription	Ovary	ovary
23	chr1:214640800-214649400	Weak transcription	Right Atrium	heart
24	chr1:214640800-214649600	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:214640800-214650200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr1:214641200-214646000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:214641200-214646600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:214641400-214647000	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:214641400-214667800	Weak transcription	Hela-S3	cervix
30	chr1:214642800-214646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr1:214643000-214646600	Weak transcription	Fetal Heart	heart
32	chr1:214643200-214646600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:214644400-214645400	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr1:214644400-214645600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:214644400-214646000	Enhancers	A549	lung
36	chr1:214644400-214648400	Enhancers	HMEC	breast
37	chr1:214644400-214650800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr1:214644600-214645600	Genic enhancers	HSMM	muscle
39	chr1:214644600-214645800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:214644600-214647000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:214644600-214647800	Enhancers	Muscle Satellite Cultured Cells	--
42	chr1:214644600-214649400	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr1:214644600-214649600	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr1:214644600-214651400	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr1:214644800-214645400	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr1:214644800-214645600	Genic enhancers	NHEK	skin
47	chr1:214644800-214646000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:214644800-214646000	Enhancers	Psoas Muscle	Psoas
49	chr1:214644800-214646200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr1:214644800-214647400	Enhancers	Placenta Amnion	Placenta Amnion

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