Variant report

Variant	rs17790562
Chromosome Location	chr1:214647628-214647629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214647353..214649494-chr1:214677849..214679754,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10157143	1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs10158378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10158490	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864102	0.80[YRI][hapmap]
rs11120329	0.82[YRI][hapmap]
rs11120330	0.82[YRI][hapmap]
rs12068677	0.82[YRI][hapmap]
rs12128034	0.82[YRI][hapmap]
rs12739305	0.80[YRI][hapmap]
rs12743237	0.90[YRI][hapmap]
rs17023030	1.00[YRI][hapmap]
rs17732539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17732675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17790515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4233302	0.84[LWK][hapmap];1.00[YRI][hapmap]
rs4233304	0.84[LWK][hapmap];1.00[YRI][hapmap]
rs4284238	0.84[LWK][hapmap];1.00[YRI][hapmap]
rs4474219	0.84[LWK][hapmap];1.00[YRI][hapmap]
rs4571940	0.92[LWK][hapmap];1.00[YRI][hapmap]
rs4584365	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4655250	0.82[YRI][hapmap]
rs4655251	0.82[YRI][hapmap]
rs4655252	0.90[YRI][hapmap]
rs4655253	0.82[YRI][hapmap]
rs4655254	0.90[YRI][hapmap]
rs4655259	1.00[YRI][hapmap]
rs4655347	0.82[YRI][hapmap]
rs4655350	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4655352	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs5020616	0.82[YRI][hapmap]
rs5020617	0.82[YRI][hapmap]
rs5024205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56156299	0.91[AFR][1000 genomes]
rs57880156	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58530653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60798187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61745825	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819590	1.00[ASN][1000 genomes]
rs61819591	1.00[ASN][1000 genomes]
rs61819594	1.00[ASN][1000 genomes]
rs61819596	1.00[ASN][1000 genomes]
rs61819600	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819620	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819621	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61819622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819623	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61819624	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819629	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819637	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819638	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819640	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819641	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819642	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819644	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540835	0.80[YRI][hapmap]
rs6676807	0.84[LWK][hapmap];1.00[YRI][hapmap]
rs6682847	1.00[YRI][hapmap]
rs6684018	1.00[YRI][hapmap]
rs6685434	0.84[LWK][hapmap];1.00[YRI][hapmap]
rs74139884	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139885	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139888	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74142708	0.91[AFR][1000 genomes]
rs7531610	0.84[LWK][hapmap];1.00[YRI][hapmap]
rs7540188	0.92[LWK][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214613000-214649400	Weak transcription	Lung	lung
2	chr1:214638200-214649200	Weak transcription	Aorta	Aorta
3	chr1:214638400-214649000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:214638400-214649400	Weak transcription	Right Ventricle	heart
5	chr1:214640200-214649400	Weak transcription	Placenta	Placenta
6	chr1:214640200-214650000	Weak transcription	Fetal Lung	lung
7	chr1:214640400-214649400	Weak transcription	Pancreas	Pancrea
8	chr1:214640800-214648000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:214640800-214649000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:214640800-214649400	Weak transcription	Ovary	ovary
11	chr1:214640800-214649400	Weak transcription	Right Atrium	heart
12	chr1:214640800-214649600	Weak transcription	Fetal Muscle Leg	muscle
13	chr1:214640800-214650200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:214641400-214667800	Weak transcription	Hela-S3	cervix
15	chr1:214644400-214648400	Enhancers	HMEC	breast
16	chr1:214644400-214650800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr1:214644600-214647800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr1:214644600-214649400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr1:214644600-214649600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:214644600-214651400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr1:214644800-214649000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:214644800-214650600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:214644800-214651000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:214645000-214648600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:214645000-214651800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:214645200-214647800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:214645200-214656600	Weak transcription	Fetal Intestine Large	intestine
28	chr1:214645400-214647800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr1:214645400-214648800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr1:214645600-214649000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:214645800-214647800	Enhancers	NHDF-Ad	bronchial
32	chr1:214645800-214648200	Enhancers	Osteobl	bone
33	chr1:214645800-214648800	Weak transcription	Esophagus	oesophagus
34	chr1:214645800-214648800	Enhancers	NHEK	skin
35	chr1:214645800-214649000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:214645800-214649200	Enhancers	NH-A	brain
37	chr1:214645800-214649400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr1:214645800-214649400	Weak transcription	Left Ventricle	heart
39	chr1:214645800-214649600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr1:214645800-214666000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr1:214646000-214648200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:214646000-214672200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:214646200-214650600	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr1:214646200-214651000	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr1:214646200-214651800	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr1:214646600-214648000	Enhancers	Fetal Heart	heart
47	chr1:214646600-214648200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr1:214646800-214648000	Enhancers	HepG2	liver
49	chr1:214647000-214647800	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr1:214647000-214648000	Weak transcription	Stomach Mucosa	stomach

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