Variant report

Variant	rs17732675
Chromosome Location	chr1:214615931-214615932
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214614481..214615989-chr1:214619724..214621377,2	MCF-7	breast:
2	chr1:214615872..214617587-chr1:214619131..214620806,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10158378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10158490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10159086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10159464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12732499	1.00[AFR][1000 genomes]
rs12740482	1.00[AFR][1000 genomes]
rs17732539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17790562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34415256	1.00[AFR][1000 genomes]
rs35226076	1.00[AFR][1000 genomes]
rs35646913	1.00[AFR][1000 genomes]
rs4584365	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5024205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57880156	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58530653	1.00[ASN][1000 genomes]
rs60798187	1.00[ASN][1000 genomes]
rs61745825	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61819590	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819600	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819616	1.00[ASN][1000 genomes]
rs61819617	1.00[ASN][1000 genomes]
rs61819618	1.00[ASN][1000 genomes]
rs61819620	1.00[ASN][1000 genomes]
rs61819621	0.94[ASN][1000 genomes]
rs61819622	1.00[ASN][1000 genomes]
rs61819624	1.00[ASN][1000 genomes]
rs61819625	1.00[ASN][1000 genomes]
rs61819627	1.00[ASN][1000 genomes]
rs61819628	1.00[ASN][1000 genomes]
rs61819629	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61819630	1.00[ASN][1000 genomes]
rs61819631	1.00[ASN][1000 genomes]
rs61819632	1.00[ASN][1000 genomes]
rs61819637	1.00[ASN][1000 genomes]
rs61819638	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61819640	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61819641	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61819642	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61819644	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74139884	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139885	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139887	1.00[ASN][1000 genomes]
rs74139888	1.00[ASN][1000 genomes]
rs74139889	1.00[ASN][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214594000-214618000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:214601600-214625200	Weak transcription	Esophagus	oesophagus
3	chr1:214601600-214633000	Weak transcription	Gastric	stomach
4	chr1:214602800-214617600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:214604000-214617600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:214610400-214620600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:214610600-214617000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:214611600-214616200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr1:214611600-214616200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:214611600-214619200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:214611600-214620400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:214611800-214618000	Weak transcription	Right Atrium	heart
13	chr1:214611800-214620400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:214611800-214623200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:214612200-214616000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:214612800-214616800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:214613000-214619800	Weak transcription	Fetal Brain Male	brain
18	chr1:214613000-214649400	Weak transcription	Lung	lung
19	chr1:214613200-214616800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:214613200-214617600	Weak transcription	Fetal Stomach	stomach
21	chr1:214613200-214617800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:214613200-214618400	Weak transcription	Left Ventricle	heart
23	chr1:214613200-214620600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr1:214613200-214620600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr1:214613200-214628400	Weak transcription	Ovary	ovary
26	chr1:214613200-214633400	Weak transcription	Pancreas	Pancrea
27	chr1:214613400-214616000	Enhancers	HMEC	breast
28	chr1:214613400-214616200	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr1:214613400-214616200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:214613400-214617000	Weak transcription	HSMMtube	muscle
31	chr1:214613400-214618000	Weak transcription	Adipose Nuclei	Adipose
32	chr1:214613400-214620200	Weak transcription	Brain Angular Gyrus	brain
33	chr1:214613600-214616000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr1:214613600-214617000	Weak transcription	Fetal Muscle Leg	muscle
35	chr1:214613600-214618000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:214613600-214618200	Weak transcription	Colonic Mucosa	Colon
37	chr1:214613600-214618600	Weak transcription	Placenta	Placenta
38	chr1:214613600-214619000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr1:214613600-214619200	Weak transcription	Brain Anterior Caudate	brain
40	chr1:214613600-214619400	Weak transcription	Brain Substantia Nigra	brain
41	chr1:214613600-214620600	Weak transcription	Fetal Lung	lung
42	chr1:214613800-214617000	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr1:214614200-214616200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:214614200-214617200	Weak transcription	Hela-S3	cervix
45	chr1:214614200-214619200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr1:214614200-214619200	Weak transcription	Fetal Kidney	kidney
47	chr1:214614400-214616600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr1:214614400-214616600	Strong transcription	HSMM	muscle
49	chr1:214614400-214618000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr1:214614400-214618000	Weak transcription	Brain Hippocampus Middle	brain

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