Variant report

Variant	rs61819600
Chromosome Location	chr1:214634172-214634173
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10158378	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10158490	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159086	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159464	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12732499	1.00[AFR][1000 genomes]
rs12740482	1.00[AFR][1000 genomes]
rs17732539	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17732675	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790515	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790562	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34415256	1.00[AFR][1000 genomes]
rs35226076	1.00[AFR][1000 genomes]
rs35646913	1.00[AFR][1000 genomes]
rs4584365	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5024205	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57880156	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58530653	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60798187	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61745825	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819590	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819591	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819594	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819596	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819616	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819617	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819618	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819620	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819621	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61819622	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819623	0.91[EUR][1000 genomes]
rs61819624	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819625	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819627	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819628	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819629	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819630	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819631	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819632	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819637	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819638	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819640	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819641	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819642	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61819644	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139884	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139885	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139887	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139888	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74139889	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214613000-214649400	Weak transcription	Lung	lung
2	chr1:214620000-214637400	Weak transcription	Fetal Brain Male	brain
3	chr1:214620800-214636800	Weak transcription	Adipose Nuclei	Adipose
4	chr1:214620800-214637800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:214621000-214639800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:214624000-214634600	Weak transcription	Fetal Stomach	stomach
7	chr1:214625800-214636800	Weak transcription	Esophagus	oesophagus
8	chr1:214625800-214644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:214627000-214635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:214627200-214640000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:214628400-214636800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:214628600-214636800	Weak transcription	Aorta	Aorta
13	chr1:214628600-214636800	Weak transcription	Fetal Muscle Leg	muscle
14	chr1:214628600-214637600	Weak transcription	Ovary	ovary
15	chr1:214628600-214637800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr1:214628600-214637800	Weak transcription	Placenta	Placenta
17	chr1:214628600-214640600	Weak transcription	Right Atrium	heart
18	chr1:214628800-214636800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr1:214628800-214639400	Weak transcription	Stomach Mucosa	stomach
20	chr1:214629000-214635400	Weak transcription	HSMMtube	muscle
21	chr1:214629000-214637800	Weak transcription	Right Ventricle	heart
22	chr1:214629200-214635200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:214629200-214644800	Weak transcription	Psoas Muscle	Psoas
24	chr1:214629400-214635600	Weak transcription	NHLF	lung
25	chr1:214629800-214635200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:214630000-214635000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:214630200-214635200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:214630200-214635200	Weak transcription	NHDF-Ad	bronchial
29	chr1:214630400-214634200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:214630400-214637000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr1:214630800-214636400	Weak transcription	Fetal Heart	heart
32	chr1:214631800-214637000	Weak transcription	Left Ventricle	heart
33	chr1:214632200-214634800	Weak transcription	NH-A	brain
34	chr1:214632200-214635200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:214632200-214636800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:214632400-214637000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:214633000-214634200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:214633000-214634200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:214633000-214634200	Enhancers	Gastric	stomach
40	chr1:214633000-214634400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr1:214633200-214634200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:214633200-214634400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr1:214633200-214634400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr1:214633200-214634400	Enhancers	A549	lung
45	chr1:214633200-214636000	Genic enhancers	NHEK	skin
46	chr1:214633400-214634200	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr1:214633400-214634200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr1:214633400-214634200	Enhancers	Fetal Kidney	kidney
49	chr1:214633400-214634200	Enhancers	Pancreas	Pancrea
50	chr1:214633400-214634400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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