Variant report

Variant	rs12740482
Chromosome Location	chr1:214595963-214595964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214553139..214554826-chr1:214593747..214596716,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12732499	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17732074	0.85[AMR][1000 genomes]
rs17732675	1.00[AFR][1000 genomes]
rs17788590	0.85[AMR][1000 genomes]
rs34415256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35226076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35646913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4584365	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs5024205	1.00[AFR][1000 genomes]
rs61745825	1.00[AFR][1000 genomes]
rs61819590	1.00[AFR][1000 genomes]
rs61819591	1.00[AFR][1000 genomes]
rs61819594	1.00[AFR][1000 genomes]
rs61819596	1.00[AFR][1000 genomes]
rs61819600	1.00[AFR][1000 genomes]
rs61819629	1.00[AFR][1000 genomes]
rs61819638	1.00[AFR][1000 genomes]
rs61819640	1.00[AFR][1000 genomes]
rs61819641	1.00[AFR][1000 genomes]
rs61819642	1.00[AFR][1000 genomes]
rs61819644	1.00[AFR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214572600-214612600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:214576800-214612200	Weak transcription	Fetal Intestine Large	intestine
3	chr1:214581400-214601200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:214584200-214603000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:214584400-214600000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:214591400-214612800	Weak transcription	Pancreas	Pancrea
7	chr1:214591600-214596200	Enhancers	NHEK	skin
8	chr1:214591600-214596400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:214591600-214598400	Weak transcription	Adipose Nuclei	Adipose
10	chr1:214591600-214600400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:214591600-214601200	Weak transcription	Gastric	stomach
12	chr1:214591600-214601400	Weak transcription	Lung	lung
13	chr1:214592000-214600200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:214592000-214602200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:214593000-214598400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:214593200-214613000	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:214593400-214602400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:214593400-214612800	Weak transcription	Ovary	ovary
19	chr1:214593600-214596200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:214593600-214596400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:214593800-214598600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:214594000-214596000	Weak transcription	Fetal Heart	heart
23	chr1:214594000-214596400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:214594000-214598400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:214594000-214618000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr1:214594200-214596000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:214594200-214596000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:214594200-214596800	Enhancers	NHLF	lung
29	chr1:214594400-214596000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr1:214594400-214596800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:214594400-214598600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:214594600-214596000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr1:214594600-214596000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr1:214594600-214596000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr1:214594600-214596200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr1:214594800-214597200	Enhancers	Placenta Amnion	Placenta Amnion
37	chr1:214595000-214596000	Enhancers	NH-A	brain
38	chr1:214595000-214596400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:214595000-214596800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:214595000-214596800	Enhancers	HSMMtube	muscle
41	chr1:214595000-214597000	Enhancers	HSMM	muscle
42	chr1:214595200-214596000	Enhancers	Right Ventricle	heart
43	chr1:214595200-214596200	Flanking Active TSS	Osteobl	bone
44	chr1:214595200-214596800	Enhancers	Left Ventricle	heart
45	chr1:214595200-214597000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr1:214595400-214596000	Enhancers	NHDF-Ad	bronchial
47	chr1:214595400-214596400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:214595400-214596400	Weak transcription	Psoas Muscle	Psoas
49	chr1:214595400-214596800	Enhancers	HUVEC	blood vessel
50	chr1:214595400-214601200	Weak transcription	Esophagus	oesophagus

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