Variant report

Variant	rs10157143
Chromosome Location	chr1:214645154-214645155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214640762..214643039-chr1:214644769..214647114,2	MCF-7	breast:

rs_ID	r²[population]
rs10158378	0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs10158490	1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs10159086	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs10159464	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs10864102	0.80[YRI][hapmap]
rs11120329	0.82[YRI][hapmap]
rs11120330	0.82[YRI][hapmap]
rs12068677	0.82[YRI][hapmap]
rs12128034	0.82[YRI][hapmap]
rs12739305	0.80[YRI][hapmap]
rs12743237	0.90[YRI][hapmap]
rs17023030	1.00[YRI][hapmap]
rs17790515	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17790562	1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs4233302	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs4233304	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs4284238	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs4474219	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs4571940	0.91[LWK][hapmap];1.00[YRI][hapmap]
rs4655250	0.82[YRI][hapmap]
rs4655251	0.82[YRI][hapmap]
rs4655252	0.90[YRI][hapmap]
rs4655253	0.82[YRI][hapmap]
rs4655254	0.90[YRI][hapmap]
rs4655259	1.00[YRI][hapmap]
rs4655347	0.82[YRI][hapmap]
rs4655350	1.00[YRI][hapmap]
rs4655352	1.00[YRI][hapmap]
rs5020616	0.82[YRI][hapmap]
rs5020617	0.82[YRI][hapmap]
rs55858008	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56156299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56874753	1.00[AMR][1000 genomes]
rs58530653	0.91[AFR][1000 genomes]
rs59753200	1.00[AMR][1000 genomes]
rs60157872	1.00[AMR][1000 genomes]
rs60798187	0.91[AFR][1000 genomes]
rs61564456	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61819616	0.91[AFR][1000 genomes]
rs61819617	0.91[AFR][1000 genomes]
rs61819618	0.91[AFR][1000 genomes]
rs61819620	0.85[AFR][1000 genomes]
rs61819622	0.91[AFR][1000 genomes]
rs61819623	0.85[AFR][1000 genomes]
rs61819625	0.91[AFR][1000 genomes]
rs61819627	0.91[AFR][1000 genomes]
rs61819628	0.91[AFR][1000 genomes]
rs61819630	0.91[AFR][1000 genomes]
rs61819631	0.91[AFR][1000 genomes]
rs61819632	0.91[AFR][1000 genomes]
rs61819637	0.87[AFR][1000 genomes]
rs6540835	0.80[YRI][hapmap]
rs6676807	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs6682847	1.00[YRI][hapmap]
rs6684018	1.00[YRI][hapmap]
rs6685434	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs74139869	1.00[AMR][1000 genomes]
rs74139870	1.00[AMR][1000 genomes]
rs74139874	1.00[AMR][1000 genomes]
rs74139877	1.00[AMR][1000 genomes]
rs74139884	0.84[AFR][1000 genomes]
rs74139885	0.84[AFR][1000 genomes]
rs74139887	0.91[AFR][1000 genomes]
rs74139888	0.91[AFR][1000 genomes]
rs74139889	0.91[AFR][1000 genomes]
rs74142707	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74142708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74142712	1.00[AMR][1000 genomes]
rs74142714	1.00[AMR][1000 genomes]
rs74142717	1.00[AMR][1000 genomes]
rs74142719	1.00[AMR][1000 genomes]
rs7531610	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs7540188	0.92[LWK][hapmap];1.00[YRI][hapmap]

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214613000-214649400	Weak transcription	Lung	lung
2	chr1:214634400-214646200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:214638200-214645400	Weak transcription	Left Ventricle	heart
4	chr1:214638200-214645600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:214638200-214645800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:214638200-214647400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:214638200-214649200	Weak transcription	Aorta	Aorta
8	chr1:214638400-214649000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:214638400-214649400	Weak transcription	Right Ventricle	heart
10	chr1:214638600-214646800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:214640200-214646600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:214640200-214647400	Weak transcription	Fetal Kidney	kidney
13	chr1:214640200-214649400	Weak transcription	Placenta	Placenta
14	chr1:214640200-214650000	Weak transcription	Fetal Lung	lung
15	chr1:214640400-214649400	Weak transcription	Pancreas	Pancrea
16	chr1:214640800-214645200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:214640800-214645400	Weak transcription	HSMMtube	muscle
18	chr1:214640800-214645600	Weak transcription	NHLF	lung
19	chr1:214640800-214645800	Weak transcription	NH-A	brain
20	chr1:214640800-214645800	Weak transcription	NHDF-Ad	bronchial
21	chr1:214640800-214648000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr1:214640800-214649000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr1:214640800-214649400	Weak transcription	Ovary	ovary
24	chr1:214640800-214649400	Weak transcription	Right Atrium	heart
25	chr1:214640800-214649600	Weak transcription	Fetal Muscle Leg	muscle
26	chr1:214640800-214650200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr1:214641200-214646000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:214641200-214646600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:214641400-214647000	Weak transcription	Colon Smooth Muscle	Colon
30	chr1:214641400-214667800	Weak transcription	Hela-S3	cervix
31	chr1:214642800-214646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:214643000-214646600	Weak transcription	Fetal Heart	heart
33	chr1:214643200-214646600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:214644400-214645400	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr1:214644400-214645600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr1:214644400-214646000	Enhancers	A549	lung
37	chr1:214644400-214648400	Enhancers	HMEC	breast
38	chr1:214644400-214650800	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr1:214644600-214645200	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr1:214644600-214645200	Enhancers	Fetal Intestine Large	intestine
41	chr1:214644600-214645600	Genic enhancers	HSMM	muscle
42	chr1:214644600-214645800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:214644600-214647000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:214644600-214647800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr1:214644600-214649400	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr1:214644600-214649600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr1:214644600-214651400	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr1:214644800-214645200	Enhancers	H9 Cell Line	embryonic stem cell
49	chr1:214644800-214645400	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr1:214644800-214645600	Genic enhancers	NHEK	skin

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