Variant report

Variant	rs6689084
Chromosome Location	chr1:214646648-214646649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214640762..214643039-chr1:214644769..214647114,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10494980	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10746445	0.83[CHB][hapmap]
rs10864100	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10864101	0.85[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864102	0.85[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120329	0.85[CHB][hapmap];0.85[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120330	0.85[CHB][hapmap];0.85[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120331	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120332	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120333	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12068677	0.85[CHB][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12096551	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs12128034	0.84[CHB][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12739305	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12739336	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743237	0.85[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12757384	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12757776	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4145623	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4233301	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4233302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4233303	0.87[ASN][1000 genomes]
rs4233304	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4233305	0.85[CHB][hapmap]
rs4233306	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4269744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4284238	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4474219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4480328	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4571940	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4655250	0.85[CHB][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655251	0.85[CHB][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655252	0.85[CHB][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655253	0.85[CHB][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655254	0.85[CHB][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655255	0.84[CHB][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655256	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655258	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655347	0.85[CHB][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655348	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655349	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655350	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655352	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655355	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5020616	0.85[CHB][hapmap];0.85[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5020617	0.85[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540830	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6540835	0.85[CHB][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540836	0.84[CHB][hapmap]
rs6540838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540841	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6661786	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6668440	0.85[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6671350	0.81[CEU][hapmap]
rs6676807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6676956	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6682627	1.00[CEU][hapmap]
rs6682847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684018	0.88[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6685434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6691633	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518513	0.83[CHB][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7525020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7527320	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7528315	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531610	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7540188	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7540288	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214613000-214649400	Weak transcription	Lung	lung
2	chr1:214638200-214647400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:214638200-214649200	Weak transcription	Aorta	Aorta
4	chr1:214638400-214649000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:214638400-214649400	Weak transcription	Right Ventricle	heart
6	chr1:214638600-214646800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:214640200-214647400	Weak transcription	Fetal Kidney	kidney
8	chr1:214640200-214649400	Weak transcription	Placenta	Placenta
9	chr1:214640200-214650000	Weak transcription	Fetal Lung	lung
10	chr1:214640400-214649400	Weak transcription	Pancreas	Pancrea
11	chr1:214640800-214648000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:214640800-214649000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:214640800-214649400	Weak transcription	Ovary	ovary
14	chr1:214640800-214649400	Weak transcription	Right Atrium	heart
15	chr1:214640800-214649600	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:214640800-214650200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr1:214641400-214647000	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:214641400-214667800	Weak transcription	Hela-S3	cervix
19	chr1:214642800-214646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:214644400-214648400	Enhancers	HMEC	breast
21	chr1:214644400-214650800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr1:214644600-214647000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:214644600-214647800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr1:214644600-214649400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr1:214644600-214649600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr1:214644600-214651400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr1:214644800-214647400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr1:214644800-214649000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:214644800-214650600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:214644800-214651000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr1:214645000-214646800	Weak transcription	HepG2	liver
32	chr1:214645000-214647200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:214645000-214647400	Weak transcription	Fetal Intestine Small	intestine
34	chr1:214645000-214648600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:214645000-214651800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:214645200-214647400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr1:214645200-214647800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:214645200-214656600	Weak transcription	Fetal Intestine Large	intestine
39	chr1:214645400-214647000	Enhancers	Stomach Mucosa	stomach
40	chr1:214645400-214647000	Weak transcription	HUVEC	blood vessel
41	chr1:214645400-214647800	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr1:214645400-214648800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr1:214645600-214647000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:214645600-214647200	Enhancers	NHLF	lung
45	chr1:214645600-214647400	Enhancers	HSMM	muscle
46	chr1:214645600-214649000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:214645800-214646800	Weak transcription	HSMMtube	muscle
48	chr1:214645800-214647800	Enhancers	NHDF-Ad	bronchial
49	chr1:214645800-214648200	Enhancers	Osteobl	bone
50	chr1:214645800-214648800	Weak transcription	Esophagus	oesophagus

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