Variant report

Variant	rs6546270
Chromosome Location	chr2:67078198-67078199
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10196555	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1073280	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1109351	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1110585	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1111235	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12713581	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12713582	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12713583	0.93[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs13007060	0.83[AFR][1000 genomes]
rs13008648	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13018976	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13031245	0.90[ASN][1000 genomes]
rs13420432	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2194662	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2194664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194665	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194666	0.95[AFR][1000 genomes]
rs2194667	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2216925	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4671751	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4671754	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6728760	0.84[AFR][1000 genomes]
rs7599395	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9798168	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67068400-67080200	Weak transcription	Ovary	ovary
2	chr2:67069000-67081400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:67072800-67079200	Enhancers	Pancreas	Pancrea
4	chr2:67074200-67079000	Weak transcription	Gastric	stomach
5	chr2:67074600-67078800	Weak transcription	HepG2	liver
6	chr2:67074600-67080000	Weak transcription	Fetal Intestine Small	intestine
7	chr2:67074600-67080000	Weak transcription	Fetal Kidney	kidney
8	chr2:67076200-67079400	Enhancers	Fetal Lung	lung
9	chr2:67076200-67079600	Enhancers	Fetal Stomach	stomach
10	chr2:67076200-67081800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:67076200-67082400	Enhancers	Colon Smooth Muscle	Colon
12	chr2:67076200-67082400	Enhancers	NHLF	lung
13	chr2:67077200-67080800	Enhancers	Rectal Smooth Muscle	rectum
14	chr2:67077600-67078400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr2:67077600-67078400	Weak transcription	Osteobl	bone
16	chr2:67077600-67080000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:67077800-67078200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:67077800-67078600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:67077800-67079600	Enhancers	NHDF-Ad	bronchial
20	chr2:67077800-67080200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:67077800-67080600	Weak transcription	Fetal Muscle Leg	muscle
22	chr2:67078000-67078400	Weak transcription	HSMM	muscle
23	chr2:67078000-67079200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:67078000-67079600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:67078000-67079600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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