Variant report

Variant	rs13031245
Chromosome Location	chr2:67115938-67115939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67099463..67101365-chr2:67115070..67117107,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10171004	0.82[AFR][1000 genomes]
rs10196555	0.98[ASN][1000 genomes]
rs1073280	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1109351	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1110585	0.95[ASN][1000 genomes]
rs1111235	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12713581	0.98[ASN][1000 genomes]
rs12713582	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12713583	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13018976	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13420432	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2194662	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2194664	0.90[ASN][1000 genomes]
rs2194665	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2194667	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2216925	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4671751	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4671754	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6546270	0.90[ASN][1000 genomes]
rs7599395	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9798168	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874247	chr2:67105342-67141322	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv2762259	chr2:67109728-67165987	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67112400-67117800	Enhancers	Colon Smooth Muscle	Colon
2	chr2:67112800-67124200	Weak transcription	Pancreas	Pancrea
3	chr2:67115400-67117200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:67115400-67117200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:67115400-67117600	Enhancers	Rectal Smooth Muscle	rectum
6	chr2:67115400-67117800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:67115400-67118800	Enhancers	Fetal Lung	lung
8	chr2:67115600-67116200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:67115600-67116400	Enhancers	HMEC	breast
10	chr2:67115600-67116400	Enhancers	NHEK	skin
11	chr2:67115600-67116600	Enhancers	NH-A	brain
12	chr2:67115600-67117200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:67115600-67117200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr2:67115600-67117200	Enhancers	NHDF-Ad	bronchial
15	chr2:67115600-67117600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:67115600-67117600	Enhancers	HSMM	muscle
17	chr2:67115600-67117800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:67115600-67117800	Enhancers	Osteobl	bone
19	chr2:67115800-67116200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:67115800-67116200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:67115800-67116200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:67115800-67116200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:67115800-67116800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:67115800-67116800	Enhancers	Adipose Nuclei	Adipose
25	chr2:67115800-67117200	Enhancers	Fetal Stomach	stomach
26	chr2:67115800-67117800	Enhancers	NHLF	lung

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