Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10176733	0.81[AFR][1000 genomes]
rs10183135	0.94[AFR][1000 genomes]
rs10196555	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1073280	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1109351	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1110585	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1111235	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12713575	0.97[AFR][1000 genomes]
rs12713581	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12713582	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12713583	0.94[ASN][1000 genomes]
rs12713588	0.83[AFR][1000 genomes]
rs13008648	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13015121	0.81[AFR][1000 genomes]
rs13018976	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13031245	0.97[ASN][1000 genomes]
rs13032699	0.88[AFR][1000 genomes]
rs13420432	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2194662	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2194664	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2194665	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2194667	0.91[ASN][1000 genomes]
rs2216925	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4671751	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4671754	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6546270	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7599395	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67081400-67089800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:67081800-67086200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:67082200-67089800	Weak transcription	HSMM	muscle
4	chr2:67082200-67089800	Weak transcription	HSMMtube	muscle
5	chr2:67082400-67086000	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:67082400-67089600	Weak transcription	NHLF	lung

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