Variant report

Variant	rs12713588
Chromosome Location	chr2:67133822-67133823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10167484	0.91[CHB][hapmap]
rs10170124	0.82[ASN][1000 genomes]
rs10176733	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10177813	0.91[CHB][hapmap]
rs10183135	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10186923	0.91[CHB][hapmap]
rs10190086	1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10196555	0.88[AFR][1000 genomes]
rs10197753	0.91[CHB][hapmap]
rs10496137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713575	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12713576	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs12713578	0.82[ASN][1000 genomes]
rs12713581	0.88[AFR][1000 genomes]
rs12713585	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12713586	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12713587	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12995173	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13009433	0.82[ASN][1000 genomes]
rs13015121	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13020124	0.81[ASN][1000 genomes]
rs13387078	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1559602	0.81[ASN][1000 genomes]
rs17632177	0.81[ASN][1000 genomes]
rs2113769	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2861285	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35156489	0.81[ASN][1000 genomes]
rs4671161	0.91[CHB][hapmap]
rs4671755	1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4671756	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6546272	0.88[YRI][hapmap]
rs6715872	0.81[ASN][1000 genomes]
rs9798168	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874247	chr2:67105342-67141322	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv2762259	chr2:67109728-67165987	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67130800-67134200	Weak transcription	Fetal Heart	heart

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