Variant report

Variant	rs10170124
Chromosome Location	chr2:67084782-67084783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10167484	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10171004	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10176733	0.93[ASN][1000 genomes]
rs10183135	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10190086	0.93[ASN][1000 genomes]
rs10496137	0.82[ASN][1000 genomes]
rs1110585	0.90[AFR][1000 genomes]
rs1111235	0.90[AFR][1000 genomes]
rs11677614	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12713575	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12713578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713584	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12713585	0.82[ASN][1000 genomes]
rs12713586	0.84[ASN][1000 genomes]
rs12713587	0.85[ASN][1000 genomes]
rs12713588	0.82[ASN][1000 genomes]
rs12995173	0.95[ASN][1000 genomes]
rs12997959	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12998082	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13007060	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13009433	0.94[ASN][1000 genomes]
rs13015121	0.95[ASN][1000 genomes]
rs13018976	0.84[AFR][1000 genomes]
rs13020124	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13032699	0.88[ASN][1000 genomes]
rs13387078	0.82[ASN][1000 genomes]
rs13416909	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13420432	0.98[AFR][1000 genomes]
rs1559602	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17632177	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2113769	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2161975	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2194660	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2194662	0.97[AFR][1000 genomes]
rs2194663	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2194664	0.86[AFR][1000 genomes]
rs2194665	0.81[AFR][1000 genomes]
rs2194666	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2216924	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2216925	0.81[AFR][1000 genomes]
rs2861285	0.82[ASN][1000 genomes]
rs35156489	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4671751	0.81[AFR][1000 genomes]
rs4671752	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4671754	0.91[AFR][1000 genomes]
rs4671755	0.93[ASN][1000 genomes]
rs6715872	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6728659	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6728760	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7594571	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7599395	0.83[AFR][1000 genomes]
rs7601449	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67081400-67089800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:67081800-67086200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:67082200-67089800	Weak transcription	HSMM	muscle
4	chr2:67082200-67089800	Weak transcription	HSMMtube	muscle
5	chr2:67082400-67086000	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:67082400-67089600	Weak transcription	NHLF	lung

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