Variant report

Variant	rs13020124
Chromosome Location	chr2:67105342-67105343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10167484	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10170124	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10171004	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10176733	0.94[ASN][1000 genomes]
rs10177813	0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs10183135	0.97[ASN][1000 genomes]
rs10186923	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs10190086	0.81[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10197753	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs10496137	0.81[CHB][hapmap];0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs1110585	0.87[AFR][1000 genomes]
rs1111235	0.87[AFR][1000 genomes]
rs11677614	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12713575	0.92[ASN][1000 genomes]
rs12713576	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs12713578	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12713584	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12713585	0.84[ASN][1000 genomes]
rs12713586	0.85[ASN][1000 genomes]
rs12713587	0.81[CHB][hapmap];0.88[CHD][hapmap];0.84[ASN][1000 genomes]
rs12713588	0.81[ASN][1000 genomes]
rs12995173	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12997959	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12998082	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13007060	0.94[ASN][1000 genomes]
rs13009433	0.95[ASN][1000 genomes]
rs13015121	0.97[ASN][1000 genomes]
rs13032699	0.90[ASN][1000 genomes]
rs13387078	0.81[ASN][1000 genomes]
rs13416909	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13420432	0.82[AFR][1000 genomes]
rs1559602	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17632177	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113769	0.97[ASN][1000 genomes]
rs2161975	0.95[ASN][1000 genomes]
rs2194660	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2194662	0.81[AFR][1000 genomes]
rs2194663	0.95[ASN][1000 genomes]
rs2194666	0.93[ASN][1000 genomes]
rs2216924	0.93[ASN][1000 genomes]
rs2861285	0.84[ASN][1000 genomes]
rs35156489	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671161	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs4671752	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4671754	0.88[AFR][1000 genomes]
rs4671755	0.82[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4671756	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs6715872	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6728659	0.95[ASN][1000 genomes]
rs6728760	0.95[ASN][1000 genomes]
rs7594571	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7599395	0.80[AFR][1000 genomes]
rs7601449	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv874247	chr2:67105342-67141322	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67103800-67108000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links