Variant report

Variant	rs7601449
Chromosome Location	chr2:67080955-67080956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10167484	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs10170124	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10171004	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10176733	0.90[ASN][1000 genomes]
rs10177813	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10183135	0.92[ASN][1000 genomes]
rs10186923	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10190086	0.91[CHB][hapmap];0.90[ASN][1000 genomes]
rs10197753	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10496137	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs11677614	0.93[ASN][1000 genomes]
rs12713575	0.97[ASN][1000 genomes]
rs12713576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12713578	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12713584	0.93[ASN][1000 genomes]
rs12713586	0.81[ASN][1000 genomes]
rs12713587	0.91[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12995173	0.92[ASN][1000 genomes]
rs12997959	0.93[ASN][1000 genomes]
rs12998082	0.91[ASN][1000 genomes]
rs13007060	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13009433	0.91[ASN][1000 genomes]
rs13015121	0.92[ASN][1000 genomes]
rs13020124	0.95[ASN][1000 genomes]
rs13032699	0.91[ASN][1000 genomes]
rs13416909	0.93[ASN][1000 genomes]
rs13420432	0.87[AFR][1000 genomes]
rs1559602	0.95[ASN][1000 genomes]
rs17632177	0.95[ASN][1000 genomes]
rs2113769	0.92[ASN][1000 genomes]
rs2161975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194660	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2194662	0.86[AFR][1000 genomes]
rs2194663	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194664	0.97[AFR][1000 genomes]
rs2194666	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2216924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35156489	0.95[ASN][1000 genomes]
rs4671161	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs4671752	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4671754	0.81[AFR][1000 genomes]
rs4671755	0.91[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs4671756	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs6715872	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6728659	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728760	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594571	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67069000-67081400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:67076200-67081800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:67076200-67082400	Enhancers	Colon Smooth Muscle	Colon
4	chr2:67076200-67082400	Enhancers	NHLF	lung
5	chr2:67078400-67081200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:67079200-67081000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:67080000-67081000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:67080000-67081200	Enhancers	HSMM	muscle
9	chr2:67080000-67081400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:67080000-67082400	Enhancers	Fetal Stomach	stomach
11	chr2:67080200-67081200	Active TSS	Fetal Brain Male	brain
12	chr2:67080200-67081400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:67080200-67081400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:67080200-67082400	Enhancers	Ovary	ovary
15	chr2:67080200-67082400	Enhancers	NH-A	brain
16	chr2:67080400-67082000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:67080600-67081000	Weak transcription	Fetal Kidney	kidney
18	chr2:67080600-67081600	Enhancers	Fetal Intestine Small	intestine
19	chr2:67080600-67081600	Enhancers	Fetal Muscle Leg	muscle
20	chr2:67080600-67082200	Enhancers	HSMMtube	muscle
21	chr2:67080600-67082200	Enhancers	NHDF-Ad	bronchial
22	chr2:67080600-67082400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr2:67080800-67081000	Flanking Active TSS	Rectal Smooth Muscle	rectum
24	chr2:67080800-67081000	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr2:67080800-67081200	Flanking Active TSS	Fetal Lung	lung
26	chr2:67080800-67081400	Enhancers	Adipose Nuclei	Adipose
27	chr2:67080800-67082200	Enhancers	Osteobl	bone

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