Variant report

Variant	rs12713587
Chromosome Location	chr2:67127907-67127908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67121252..67123369-chr2:67127178..67130032,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10167484	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs10170124	0.85[ASN][1000 genomes]
rs10171004	0.82[ASN][1000 genomes]
rs10176733	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10177813	0.90[CHB][hapmap]
rs10183135	0.86[ASN][1000 genomes]
rs10186923	0.91[CHB][hapmap]
rs10190086	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10196555	0.85[AFR][1000 genomes]
rs10197753	0.91[CHB][hapmap]
rs10496137	0.87[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11677614	0.81[ASN][1000 genomes]
rs12713575	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12713576	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs12713578	0.85[ASN][1000 genomes]
rs12713581	0.85[AFR][1000 genomes]
rs12713584	0.81[ASN][1000 genomes]
rs12713585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12713586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12713588	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12995173	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12997959	0.81[ASN][1000 genomes]
rs13009433	0.85[ASN][1000 genomes]
rs13015121	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13020124	0.84[ASN][1000 genomes]
rs13387078	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13416909	0.81[ASN][1000 genomes]
rs1559602	0.84[ASN][1000 genomes]
rs17632177	0.84[ASN][1000 genomes]
rs2113769	0.86[ASN][1000 genomes]
rs2161975	0.82[ASN][1000 genomes]
rs2194660	0.82[ASN][1000 genomes]
rs2194663	0.82[ASN][1000 genomes]
rs2861285	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35156489	0.84[ASN][1000 genomes]
rs4671161	0.91[CHB][hapmap]
rs4671755	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4671756	1.00[CHB][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap]
rs6546272	0.88[YRI][hapmap]
rs6715872	0.84[ASN][1000 genomes]
rs6728659	0.82[ASN][1000 genomes]
rs6728760	0.82[ASN][1000 genomes]
rs7601449	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874247	chr2:67105342-67141322	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv2762259	chr2:67109728-67165987	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67124600-67128400	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:67124800-67128200	Weak transcription	Fetal Heart	heart
3	chr2:67124800-67128400	Weak transcription	Fetal Kidney	kidney
4	chr2:67125600-67128600	Weak transcription	Ovary	ovary
5	chr2:67125600-67128800	Weak transcription	NHDF-Ad	bronchial
6	chr2:67125800-67128400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:67125800-67128600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:67126200-67129000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:67126600-67128800	Weak transcription	HSMMtube	muscle
10	chr2:67126800-67128200	Weak transcription	NHLF	lung

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