Variant report

Variant	rs2113769
Chromosome Location	chr2:67099341-67099342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10167484	0.91[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs10170124	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10171004	0.96[ASN][1000 genomes]
rs10176733	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10177813	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs10183135	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186923	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs10190086	1.00[CHB][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10197753	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs10496137	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11677614	0.94[ASN][1000 genomes]
rs12713575	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12713576	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12713578	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12713584	0.94[ASN][1000 genomes]
rs12713585	0.87[ASN][1000 genomes]
rs12713586	0.88[ASN][1000 genomes]
rs12713587	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs12713588	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12995173	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12997959	0.94[ASN][1000 genomes]
rs12998082	0.93[ASN][1000 genomes]
rs13007060	0.91[ASN][1000 genomes]
rs13009433	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13015121	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13020124	0.97[ASN][1000 genomes]
rs13032699	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13387078	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13416909	0.94[ASN][1000 genomes]
rs1559602	0.97[ASN][1000 genomes]
rs17632177	0.97[ASN][1000 genomes]
rs2161975	0.92[ASN][1000 genomes]
rs2194660	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2194663	0.92[ASN][1000 genomes]
rs2194666	0.90[ASN][1000 genomes]
rs2216924	0.90[ASN][1000 genomes]
rs2861285	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35156489	0.97[ASN][1000 genomes]
rs4671161	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs4671752	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4671755	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4671756	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs6715872	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6728659	0.92[ASN][1000 genomes]
rs6728760	0.92[ASN][1000 genomes]
rs7594571	0.91[ASN][1000 genomes]
rs7601449	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67089400-67102000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:67089600-67102400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:67094800-67099400	Weak transcription	Fetal Stomach	stomach
4	chr2:67095600-67099600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:67095600-67100200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:67096600-67099600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:67096600-67100000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:67096600-67100400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:67097000-67100200	Weak transcription	HSMMtube	muscle
10	chr2:67097000-67100800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:67097000-67103600	Enhancers	Colon Smooth Muscle	Colon
12	chr2:67097400-67099400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:67097800-67100400	Weak transcription	HSMM	muscle
14	chr2:67098000-67099400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:67098000-67099400	Weak transcription	NHLF	lung
16	chr2:67098200-67100000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr2:67098600-67100200	Enhancers	Fetal Lung	lung
18	chr2:67098800-67100000	Enhancers	Fetal Heart	heart
19	chr2:67099000-67099800	Enhancers	Osteobl	bone
20	chr2:67099000-67100200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:67099000-67100600	Enhancers	Stomach Mucosa	stomach
22	chr2:67099000-67102400	Enhancers	NHDF-Ad	bronchial
23	chr2:67099200-67099800	Enhancers	Fetal Kidney	kidney
24	chr2:67099200-67100000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:67099200-67100000	Enhancers	HUVEC	blood vessel
26	chr2:67099200-67100600	Enhancers	NH-A	brain
27	chr2:67099200-67100800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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