Variant report

Variant	rs4671752
Chromosome Location	chr2:67077877-67077878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10167484	0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10170124	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10171004	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10176733	0.87[ASN][1000 genomes]
rs10177813	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs10183135	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10186923	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs10190086	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs10197753	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs10496137	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs11677614	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12713575	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12713576	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12713578	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12713584	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12713587	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs12995173	0.90[ASN][1000 genomes]
rs12997959	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12998082	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13007060	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13009433	0.88[ASN][1000 genomes]
rs13015121	0.90[ASN][1000 genomes]
rs13020124	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13032699	0.94[ASN][1000 genomes]
rs13416909	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13420432	0.81[AFR][1000 genomes]
rs1559602	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17632177	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2113769	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2161975	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2194660	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2194662	0.82[AFR][1000 genomes]
rs2194663	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2194665	0.97[AFR][1000 genomes]
rs2194666	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216924	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216925	0.97[AFR][1000 genomes]
rs35156489	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4671161	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs4671751	0.97[AFR][1000 genomes]
rs4671755	0.82[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs4671756	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs6715872	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6728659	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6728760	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7594571	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7601449	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67068400-67080200	Weak transcription	Ovary	ovary
2	chr2:67069000-67081400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:67072800-67078000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:67072800-67079200	Enhancers	Pancreas	Pancrea
5	chr2:67073000-67078000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:67074200-67079000	Weak transcription	Gastric	stomach
7	chr2:67074600-67078800	Weak transcription	HepG2	liver
8	chr2:67074600-67080000	Weak transcription	Fetal Intestine Small	intestine
9	chr2:67074600-67080000	Weak transcription	Fetal Kidney	kidney
10	chr2:67076200-67079400	Enhancers	Fetal Lung	lung
11	chr2:67076200-67079600	Enhancers	Fetal Stomach	stomach
12	chr2:67076200-67081800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:67076200-67082400	Enhancers	Colon Smooth Muscle	Colon
14	chr2:67076200-67082400	Enhancers	NHLF	lung
15	chr2:67076400-67078000	Enhancers	Placenta	Placenta
16	chr2:67077000-67078000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:67077200-67080800	Enhancers	Rectal Smooth Muscle	rectum
18	chr2:67077600-67078000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr2:67077600-67078000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:67077600-67078400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr2:67077600-67078400	Weak transcription	Osteobl	bone
22	chr2:67077600-67080000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:67077800-67078000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr2:67077800-67078000	Enhancers	Brain Germinal Matrix	brain
25	chr2:67077800-67078000	Enhancers	Psoas Muscle	Psoas
26	chr2:67077800-67078200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:67077800-67078600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr2:67077800-67079600	Enhancers	NHDF-Ad	bronchial
29	chr2:67077800-67080200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:67077800-67080600	Weak transcription	Fetal Muscle Leg	muscle

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