Variant report

Variant	rs10171004
Chromosome Location	chr2:67100850-67100851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67099463..67101365-chr2:67115070..67117107,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10167484	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10170124	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10176733	0.93[ASN][1000 genomes]
rs10183135	0.96[ASN][1000 genomes]
rs10186923	0.96[CEU][hapmap]
rs10190086	0.93[ASN][1000 genomes]
rs10197753	0.96[CEU][hapmap]
rs11677614	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12713575	0.91[ASN][1000 genomes]
rs12713576	0.83[CEU][hapmap];0.81[YRI][hapmap]
rs12713578	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12713583	0.87[YRI][hapmap];0.85[AFR][1000 genomes]
rs12713584	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12713585	0.83[ASN][1000 genomes]
rs12713586	0.84[ASN][1000 genomes]
rs12713587	0.82[ASN][1000 genomes]
rs12995173	0.96[ASN][1000 genomes]
rs12997959	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12998082	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13007060	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13009433	0.94[ASN][1000 genomes]
rs13015121	0.96[ASN][1000 genomes]
rs13020124	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13031245	0.82[AFR][1000 genomes]
rs13032699	0.88[ASN][1000 genomes]
rs13416909	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1559602	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17632177	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2113769	0.96[ASN][1000 genomes]
rs2161975	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2194660	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2194663	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2194666	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2216924	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2861285	0.83[ASN][1000 genomes]
rs35156489	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4671161	0.96[CEU][hapmap]
rs4671752	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4671755	0.93[ASN][1000 genomes]
rs6715872	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6728659	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6728760	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7594571	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7601449	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67089400-67102000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:67089600-67102400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:67097000-67103600	Enhancers	Colon Smooth Muscle	Colon
4	chr2:67099000-67102400	Enhancers	NHDF-Ad	bronchial
5	chr2:67099400-67101800	Enhancers	Fetal Stomach	stomach
6	chr2:67099400-67102400	Enhancers	NHLF	lung
7	chr2:67099600-67102400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:67099800-67101200	Weak transcription	Fetal Kidney	kidney
9	chr2:67100000-67101200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:67100000-67102200	Enhancers	Rectal Smooth Muscle	rectum
11	chr2:67100000-67102400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:67100200-67103000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:67100400-67102000	Enhancers	HSMM	muscle
14	chr2:67100600-67101200	Weak transcription	Stomach Mucosa	stomach
15	chr2:67100600-67101600	Weak transcription	NH-A	brain
16	chr2:67100600-67103800	Enhancers	Fetal Lung	lung
17	chr2:67100800-67101200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:67100800-67101200	Weak transcription	HSMMtube	muscle
19	chr2:67100800-67101400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr2:67100800-67101400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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